modENCODE |  Help |  blog

Gene : twi D. melanogaster

DB identifier  ? FBgn0003900 Secondary Identifier  ? CG2956
Name  ? twist Source  FlyBase
  • synonyms:
  • FBan0002956,
  • FBtr0071953,
  • DTwist,
  • CG2956,
  • FBpp0071864,
  • FBgn0003900,
  • EC9,
  • Twist,
  • dip5,
  • bHLHb17,
  • Tw,
  • CG2956-RA,
  • TWI,
  • CG2956-PA

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

58 Alleles

DB identifier Symbol Allele Class Organism
FBal0257910 twi[HMS01317]   Drosophila melanogaster
FBal0017298 twi[2]   Drosophila melanogaster
FBal0017303 twi[7]   Drosophila melanogaster
FBal0017299 twi[3]   Drosophila melanogaster
FBal0032963 twi[T135]   Drosophila melanogaster
FBal0032962 twi[T11]   Drosophila melanogaster
FBal0032961 twi[T10]   Drosophila melanogaster
FBal0032969 twi[+t9.2]   Drosophila melanogaster
FBal0032968 twi[T72]   Drosophila melanogaster
FBal0032967 twi[T64]   Drosophila melanogaster
FBal0035886 twi[T71]   Drosophila melanogaster
FBal0032966 twi[T48]   Drosophila melanogaster
FBal0032965 twi[T40]   Drosophila melanogaster
FBal0032964 twi[T36]   Drosophila melanogaster
FBal0040056 twi[g.PE]   Drosophila melanogaster
FBal0127168 twi[2x.CMV]   Drosophila melanogaster
FBal0032959 twi[ey55]   Drosophila melanogaster
FBal0140889 twi[Hsp83.bcd.3'UTR]   Drosophila melanogaster
FBal0154383 twi[dsRNA.cGa]   Drosophila melanogaster
FBal0063724 twi[DeltaN173.Act5C]   Drosophila melanogaster
FBal0063718 twi[DeltaN85.Act5C]   Drosophila melanogaster
FBal0035880 twi[434P]   Drosophila melanogaster
FBal0017302 twi[6]   Drosophila melanogaster
FBal0063719 twi[DeltaN346.Act5C]   Drosophila melanogaster
FBal0086274 twi[unspecified]   Drosophila melanogaster
FBal0035884 twi[HH07]   Drosophila melanogaster
FBal0035879 twi[155P]   Drosophila melanogaster
FBal0032956 twi[d50]   Drosophila melanogaster
FBal0096645 twi[dsRNA.cMa]   Drosophila melanogaster
FBal0035883 twi[99P]   Drosophila melanogaster

11 Clones

Secondary Identifier DB identifier
EK281502 FBcl0012256
EK218706 FBcl0012442
EK252727 FBcl0012566
EK250203 FBcl0012576
EK259702 FBcl0012598
EK269540 FBcl0012820
AT15089 FBcl0027919
AT19956 FBcl0027945
RP004548488 FBcl0648341
145480 FBcl0474370
165373 FBcl0474372

3 Exons

DB identifier Symbol
FBgn0003900:1 twi:1
FBgn0003900:3 twi:3
FBgn0003900:2 twi:2

2 Transcripts

DB identifier Gene
FBtr0071953 twi
FBtr0100130 twi

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0071953-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0100130-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0071953-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0100130-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
37655 NCBI Entrez Gene identifiers FBgn0003900
63264 BioGRID FBgn0003900

12 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  
Fly Transcription Factor/microRNA Regulatory Network  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 2565.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 2879.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 10.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 18.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 22.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 38.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 5.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 0.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 35.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 0.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 7.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 0.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 5.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 16.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 2282.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 51.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 12.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 0.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 33.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 2793.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 211.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 3081.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 0.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 11.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 16.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 156.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 2402.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1460.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 279.0
FBgn0003900 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 392.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0003900:1_FBgn0003900:3 Drosophila melanogaster
intron_FBgn0003900:2_FBgn0003900:3 Drosophila melanogaster

21 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage twi none -2.270506184   19067489
Lipid storage twi none 0.137683094   19067489
Lipid storage twi none 2.055765322   19067489
Lipid storage twi none -0.561780677   19067489
Wnt signaling twi Increased Wnt reporter activity 3.7   15817814
Cell size and cell-cycle regulation (1) twi none sp   16496002
Embryonic nervous system development twi Defects in nervous system development np   15534205
Dendrite pattern formation twi none np   16547170
C. trachomatis infection twi C. trachomatis infection down np   18369471
Mutant human huntingtin aggregation twi Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) twi none np   20220848
Muscle morphogenesis and function (1) twi Locomotion defect np   20220848
Heat nociception (1) twi none -0.14   21074052
Heat nociception (1) twi none -1.17   21074052
Heart development and function (1) twi none 0.75   20371351
Serratia marcescens infection (1) twi none 0.296296296296296   19520911
Notch pathway regulation (4) twi none 0   19363474
Notch pathway regulation (4) twi none 0   19363474
Adiposity regulation (1) twi none 0.087   20074523
S2 cell spreading twi none np   21041442
Glycosylation regulation (1) twi Lethal np   21203496

0 Submissions