modENCODE |  Help |  blog

Gene : RpS18 D. melanogaster

DB identifier  ? FBgn0010411 Secondary Identifier  ? CG8900
Name  ? Ribosomal protein S18 Source  FlyBase
  • synonyms:
  • FBan0008900,
  • B,
  • unnamed,
  • anon-EST:Posey27,
  • FBgn0025222,
  • FBgn0010411,
  • RS18_DROME,
  • transcription unit B,
  • FBgn0062939,
  • anon-56Fa,
  • S18,
  • anon-EST:fe2D3,
  • FBgn0014916,
  • BcDNA:RH43343,
  • CG8900,
  • anon-fast-evolving-2D3,
  • Rps18

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

6 Alleles

DB identifier Symbol Allele Class Organism
FBal0284511 RpS18[Scer\UAS.T:Avic\GFP]   Drosophila melanogaster
FBal0181790 RpS18[c02853]   Drosophila melanogaster
FBal0287477 RpS18[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0208373 RpS18[GD12535]   Drosophila melanogaster
FBal0231455 RpS18[KK101746]   Drosophila melanogaster
FBal0276199 RpS18[NIG.8900R]   Drosophila melanogaster

398 Clones

Secondary Identifier DB identifier
AA433253 FBcl0000455
IP16603 FBcl0001574
ESG016d.E21_E02 FBcl0006101
ESG0120b.B21_D03 FBcl0010585
AT13649 FBcl0036967
ESG0119a.B21_F01 FBcl0013701
AT04222 FBcl0036985
EK305155 FBcl0026426
EK205061 FBcl0026442
EK260455 FBcl0026448
AT26103 FBcl0037039
EK235420 FBcl0026458
bs38g07 FBcl0055873
EC01565 FBcl0070829
EC28835 FBcl0070839
EC33283 FBcl0070843
EC22994 FBcl0070855
EC27006 FBcl0070863
EC02006 FBcl0070869
EC29740 FBcl0070871
EC31444 FBcl0070877
EC23440 FBcl0070887
EC27385 FBcl0070897
EN09627 FBcl0100111
EN11711 FBcl0100115
EN16029 FBcl0100119
EN12313 FBcl0100121
EN03444 FBcl0100123
EN09826 FBcl0100125
EN12333 FBcl0100135

5 Exons

DB identifier Symbol
FBgn0010411:1 RpS18:1
FBgn0010411:3 RpS18:3
FBgn0010411:4 RpS18:4
FBgn0010411:5 RpS18:5
FBgn0010411:2 RpS18:2

2 Transcripts

DB identifier Gene
FBtr0086273 RpS18
FBtr0086274 RpS18

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0086273-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0086274-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0086273-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0086274-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

52 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
37292 NCBI Entrez Gene identifiers FBgn0010411
62947 BioGRID FBgn0010411

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 20580.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 12484.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 22687.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 17307.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 13682.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 33604.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 14641.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 31140.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 32149.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 16123.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 17205.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 44752.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 17080.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 33413.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 28629.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 23874.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 17657.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 17490.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 23279.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 19243.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 26915.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 15873.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 14341.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 10676.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 9830.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 18586.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 17999.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 18231.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 16912.0
FBgn0010411 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 20788.0

4 Introns

DB identifier
Organism . Name
intron_FBgn0010411:1_FBgn0010411:3 Drosophila melanogaster
intron_FBgn0010411:3_FBgn0010411:4 Drosophila melanogaster
intron_FBgn0010411:4_FBgn0010411:5 Drosophila melanogaster
intron_FBgn0010411:2_FBgn0010411:4 Drosophila melanogaster

34 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Cell size regulation RpS18 none -2.87   19216764
Lipid storage RpS18 none 1.331270461   19067489
Lipid storage RpS18 none 1.246501312   19067489
ERK signaling RpS18 ERK activation reduced weak   17086199
Drosophila C virus infection RpS18 Drosophila C virus replication down np   17040126
Cytokinesis regulation RpS18 Binucleate cells weak   15547975
Intracellular Listeria monocytogenes infection RpS18 Increased GFP protein expression moderate   16020693
Drosophila C virus infection RpS18 Drosophila C virus infection reduced np   15713840
Hedgehog signaling RpS18 Decreased Hedgehog reporter activity -2.69   16311596
Constitutive protein secretion and Golgi organization (1) RpS18 Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) RpS18 Increased G1 DNA content, decreased G2 DNA content, decreased viability sp   16496002
Cell size and cell-cycle regulation (1) RpS18 none sp   16496002
Cell size and cell-cycle regulation (2) RpS18 Decreased viability 0.87   16496002
Cell size and cell-cycle regulation (3) RpS18 Decreased cell number 403   16496002
Candida albicans phagocytosis (1) RpS18 none np   16336044
Influenza replication RpS18 Decreased Influenza replication -2.71/-3.73   18615016
Lipid storage RpS18 More dispersed droplets strong (but ribosomal)   18408709
Microtubule assembly and organization RpS18 none np   18463163
Muscle morphogenesis and function (1) RpS18 none np   20220848
Heat nociception (1) RpS18 none -1.17   21074052
Regulated secretory pathway biogenesis (1) RpS18 none 0.3   21149569
Heart development and function (1) RpS18 none 1   20371351
Serratia marcescens infection (1) RpS18 none 0.558441558441558   19520911
Notch pathway regulation (4) RpS18 none 0   19363474
PGN-induced dJNK phosphorylation RpS18 Increased P-JNK protein expression with PGN 2.51 60 min PGN induction 19893628
Hh pathway regulation RpS18 Downregulation of Hh pathway -0.621418183696401   17903264
Hh pathway regulation RpS18 Downregulation of Hh pathway -0.569818307496495   17903264
Adiposity regulation (1) RpS18 none -0.295   20074523
RTK-Ras-ERK pathway regulation (1) RpS18 Decreased ERK phosphorylation after EGF stimulation -3.96 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) RpS18 Decreased ERK phosphorylation after EGF stimulation -2.98 0 minutes EGF stimulation 22028469

0 Submissions