modENCODE |  Help |  blog

Gene : Nipped-A D. melanogaster

DB identifier  ? FBgn0053554 Secondary Identifier  ? CG33554
Name  ? Nipped-A Source  FlyBase
  • synonyms:
  • lethal(2)41Ah,
  • 41Ah,
  • TRRAP,
  • Tra-1,
  • l(2)C123,
  • dTRRAP,
  • FBgn0053554,
  • l(2)EMS34-12,
  • l(2)41Ah,
  • CG2905,
  • FBgn0020393,
  • TRA1,
  • CG10549,
  • FBgn0002172,
  • NipA,
  • Nipped,
  • FBan0002905,
  • dTra1,
  • FBgn0033013,
  • FBgn0039989,
  • FBgn0004661,
  • FBtr0086095,
  • GroupV,
  • FBgn0002067,
  • CG33554,
  • Nipped[A],
  • FBan0033554,
  • Nipped A,
  • NippedA,
  • dmTRRAP,
  • Nip-A

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

74 Alleles

DB identifier Symbol Allele Class Organism
FBal0243069 Nipped-A[MI00364]   Drosophila melanogaster
FBal0245488 Nipped-A[JF01196]   Drosophila melanogaster
FBal0244801 Nipped-A[NIG.2905R]   Drosophila melanogaster
FBal0098362 Nipped-A[C25] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0009022 Nipped-A[16]   Drosophila melanogaster
FBal0009020 Nipped-A[14]   Drosophila melanogaster
FBal0009037 Nipped-A[31]   Drosophila melanogaster
FBal0009035 Nipped-A[29]   Drosophila melanogaster
FBal0009024 Nipped-A[18]   Drosophila melanogaster
FBal0098363 Nipped-A[394.2] loss of function allele Drosophila melanogaster
FBal0098364 Nipped-A[357.2] loss of function allele Drosophila melanogaster
FBal0049800 Nipped-A[a9]   Drosophila melanogaster
FBal0009021 Nipped-A[15]   Drosophila melanogaster
FBal0150723 Nipped-A[NC186]   Drosophila melanogaster
FBal0009026 Nipped-A[20]   Drosophila melanogaster
FBal0009011 Nipped-A[5]   Drosophila melanogaster
FBal0009025 Nipped-A[19]   Drosophila melanogaster
FBal0009028 Nipped-A[22]   Drosophila melanogaster
FBal0009014 Nipped-A[8]   Drosophila melanogaster
FBal0009031 Nipped-A[25]   Drosophila melanogaster
FBal0009023 Nipped-A[17]   Drosophila melanogaster
FBal0009032 Nipped-A[26]   Drosophila melanogaster
FBal0009019 Nipped-A[13]   Drosophila melanogaster
FBal0064654 Nipped-A[IR17]   Drosophila melanogaster
FBal0009029 Nipped-A[23]   Drosophila melanogaster
FBal0009010 Nipped-A[4]   Drosophila melanogaster
FBal0064653 Nipped-A[IR43]   Drosophila melanogaster
FBal0009009 Nipped-A[3]   Drosophila melanogaster
FBal0009034 Nipped-A[28]   Drosophila melanogaster
FBal0009008 Nipped-A[2] loss of function allele Drosophila melanogaster

137 Clones

Secondary Identifier DB identifier
EK200750 FBcl0066960
EC38953 FBcl0067215
EK233432 FBcl0067332
EK307227 FBcl0067662
EK170136 FBcl0067700
EK272039 FBcl0067734
EK260947 FBcl0067738
EK272206 FBcl0067742
EK162632 FBcl0067748
EK256351 FBcl0067752
EK058142 FBcl0067756
EK307606 FBcl0067762
EK051735 FBcl0067766
EK068510 FBcl0067770
EK091232 FBcl0067774
EK297142 FBcl0067780
EK305415 FBcl0067786
EK133934 FBcl0067790
EK153512 FBcl0067794
EK054506 FBcl0067800
EK080119 FBcl0067812
EK087719 FBcl0067908
EK184446 FBcl0068234
EK168649 FBcl0068488
EK131764 FBcl0068496
EK259961 FBcl0068508
EK195157 FBcl0068512
EP09224 FBcl0073907
EP17944 FBcl0073911
EP10131 FBcl0073921

27 Exons

DB identifier Symbol
FBgn0053554:21 Nipped-A:21
FBgn0053554:19 Nipped-A:19
FBgn0053554:18 Nipped-A:18
FBgn0053554:8 Nipped-A:8
FBgn0053554:6 Nipped-A:6
FBgn0053554:27 Nipped-A:27
FBgn0053554:26 Nipped-A:26
FBgn0053554:24 Nipped-A:24
FBgn0053554:23 Nipped-A:23
FBgn0053554:22 Nipped-A:22
FBgn0053554:20 Nipped-A:20
FBgn0053554:17 Nipped-A:17
FBgn0053554:16 Nipped-A:16
FBgn0053554:15 Nipped-A:15
FBgn0053554:14 Nipped-A:14
FBgn0053554:13 Nipped-A:13
FBgn0053554:12 Nipped-A:12
FBgn0053554:10 Nipped-A:10
FBgn0053554:11 Nipped-A:11
FBgn0053554:9 Nipped-A:9
FBgn0053554:7 Nipped-A:7
FBgn0053554:5 Nipped-A:5
FBgn0053554:4 Nipped-A:4
FBgn0053554:3 Nipped-A:3
FBgn0053554:2 Nipped-A:2
FBgn0053554:1 Nipped-A:1
FBgn0053554:25 Nipped-A:25

2 Transcripts

DB identifier Gene
FBtr0303293 Nipped-A
FBtr0091528 Nipped-A

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0091528-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0303293-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0091528-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0303293-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
35483 NCBI Entrez Gene identifiers FBgn0053554
61398 BioGRID FBgn0053554

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 1365.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 1012.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1007.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1032.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1310.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 1246.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1078.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 772.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 933.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 734.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1386.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1070.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1152.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 975.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1106.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 1068.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 1128.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 971.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1429.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 1000.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 972.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1203.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 2073.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1249.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1524.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1853.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1981.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 2090.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1577.0
FBgn0053554 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1066.0

29 Introns

DB identifier
Organism . Name
intron_FBgn0053554:27_FBgn0053554:26 Drosophila melanogaster
intron_FBgn0053554:26_FBgn0053554:24 Drosophila melanogaster
intron_FBgn0053554:24_FBgn0053554:23 Drosophila melanogaster
intron_FBgn0053554:23_FBgn0053554:22 Drosophila melanogaster
intron_FBgn0053554:22_FBgn0053554:20 Drosophila melanogaster
intron_FBgn0053554:20_FBgn0053554:17 Drosophila melanogaster
intron_FBgn0053554:17_FBgn0053554:16 Drosophila melanogaster
intron_FBgn0053554:16_FBgn0053554:15 Drosophila melanogaster
intron_FBgn0053554:15_FBgn0053554:14 Drosophila melanogaster
intron_FBgn0053554:14_FBgn0053554:13 Drosophila melanogaster
intron_FBgn0053554:13_FBgn0053554:12 Drosophila melanogaster
intron_FBgn0053554:12_FBgn0053554:11 Drosophila melanogaster
intron_FBgn0053554:11_FBgn0053554:10 Drosophila melanogaster
intron_FBgn0053554:10_FBgn0053554:9 Drosophila melanogaster
intron_FBgn0053554:9_FBgn0053554:7 Drosophila melanogaster
intron_FBgn0053554:7_FBgn0053554:5 Drosophila melanogaster
intron_FBgn0053554:5_FBgn0053554:4 Drosophila melanogaster
intron_FBgn0053554:4_FBgn0053554:3 Drosophila melanogaster
intron_FBgn0053554:3_FBgn0053554:2 Drosophila melanogaster
intron_FBgn0053554:2_FBgn0053554:1 Drosophila melanogaster
intron_FBgn0053554:27_FBgn0053554:25 Drosophila melanogaster
intron_FBgn0053554:25_FBgn0053554:22 Drosophila melanogaster
intron_FBgn0053554:22_FBgn0053554:21 Drosophila melanogaster
intron_FBgn0053554:21_FBgn0053554:19 Drosophila melanogaster
intron_FBgn0053554:19_FBgn0053554:18 Drosophila melanogaster
intron_FBgn0053554:18_FBgn0053554:16 Drosophila melanogaster
intron_FBgn0053554:9_FBgn0053554:8 Drosophila melanogaster
intron_FBgn0053554:8_FBgn0053554:6 Drosophila melanogaster
intron_FBgn0053554:6_FBgn0053554:5 Drosophila melanogaster

71 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Nipped-A none 0.385728424   19067489
Lipid storage Nipped-A none 1.206816579   19067489
Lipid storage Nipped-A none -0.129668451   19067489
Lipid storage Nipped-A none -0.378609387   19067489
Lipid storage Nipped-A none 2.007025632   19067489
Lipid storage Nipped-A none 0.572245777   19067489
Lipid storage Nipped-A none -3.670836102   19067489
Lipid storage Nipped-A none 3.628999895   19067489
Lipid storage Nipped-A none 2.853764083   19067489
Lipid storage Nipped-A none -0.051776057   19067489
ERK signaling Nipped-A ERK activation reduced weak   17086199
ERK signaling Nipped-A ERK activation reduced weak   17086199
Cell cycle regulation (1) Nipped-A none np   15616552
Cell cycle regulation (2) Nipped-A none np   15616552
Cytokinesis Nipped-A Multi-nucleate cells np   15380073
Cytokinesis regulation Nipped-A Binucleate cells weak   15547975
Cell size and cell-cycle regulation (1) Nipped-A none sp   16496002
Cell size and cell-cycle regulation (1) Nipped-A none sp   16496002
NFAT signaling Nipped-A Decreased NFAT translocation 2   16511445
Candida albicans phagocytosis (1) Nipped-A Decreased Candida albicans phagocytosis np   16336044
Candida albicans phagocytosis (2) Nipped-A Decreased Escherichia coli phagocytosis 20   16336044
Candida albicans phagocytosis (3) Nipped-A Decreased latex beads phagocytosis 30   16336044
C. trachomatis infection Nipped-A C. trachomatis infection down np   18369471
Combinatorial effect with methyl methanesulphonate (1) Nipped-A Synthetic lethal with methyl methanesulphonate sp   19543366
Combinatorial effect with methyl methanesulphonate (2) Nipped-A Synthetic lethal with methyl methanesulphonate sp   19543366
Muscle morphogenesis and function (1) Nipped-A Flightless np   20220848
Muscle morphogenesis and function (1) Nipped-A Flightless np   20220848
Muscle morphogenesis and function (1) Nipped-A Weak flyer np   20220848
Muscle morphogenesis and function (4) Nipped-A Frayed myofibrils np   20220848
Heat nociception (1) Nipped-A Developmentally lethal -0.08   21074052

0 Submissions