modENCODE |  Help |  blog

Gene : Pvf3 D. melanogaster

DB identifier  ? FBgn0085407 Secondary Identifier  ? CG34378
Name  ? PDGF- and VEGF-related factor 3 Source  FlyBase
  • synonyms:
  • PVF,
  • CG34378,
  • DmVEGF-3,
  • CG13781,
  • CG13783,
  • FBgn0031889,
  • VEGF27Ca,
  • FBan0013783,
  • FBgn0051629,
  • CG13782,
  • FBgn0031891,
  • FBgn0031892,
  • FBgn0085407,
  • FBgn0031890,
  • PVFs,
  • FBan0031629,
  • PVF3,
  • CG4492,
  • VEGF,
  • CG31629

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

15 Alleles

DB identifier Symbol Allele Class Organism
FBal0260450 Pvf3[MI02845]   Drosophila melanogaster
FBal0182070 Pvf3[f04842]   Drosophila melanogaster
FBal0159957 Pvf3[EY09531]   Drosophila melanogaster
FBal0259343 Pvf3[KK104423]   Drosophila melanogaster
FBal0141571 Pvf3[dsRNA.cCa]   Drosophila melanogaster
FBal0159956 Pvf3[Scer\UAS.cRa]   Drosophila melanogaster
FBal0264442 Pvf3[MI02981]   Drosophila melanogaster
FBal0278993 Pvf3[HMS01876]   Drosophila melanogaster
FBal0208180 Pvf3[GD5238]   Drosophila melanogaster
FBal0208181 Pvf3[GD5239]   Drosophila melanogaster
FBal0208182 Pvf3[GD16589]   Drosophila melanogaster
FBal0222737 Pvf3[f04177]   Drosophila melanogaster
FBal0238407 Pvf3[KK112796]   Drosophila melanogaster
FBal0264657 Pvf3[MI04168]   Drosophila melanogaster
FBal0271635 Pvf3[NIG.13781R]   Drosophila melanogaster

58 Clones

Secondary Identifier DB identifier
33981 FBcl0397492
EK209813 FBcl0019214
EK259960 FBcl0019304
EK209454 FBcl0019350
EK097348 FBcl0019430
EK225330 FBcl0019472
EK018031 FBcl0019560
EK148411 FBcl0019600
EK097401 FBcl0019684
IP10669 FBcl0001410
EK274864 FBcl0019894
EK172627 FBcl0019938
EK248950 FBcl0019978
EK228547 FBcl0020024
EK102156 FBcl0022504
CK01028 FBcl0059367
EP02839 FBcl0078265
EP00861 FBcl0078275
EP11648 FBcl0078291
EP10844 FBcl0078347
EN03626 FBcl0093683
EN16405 FBcl0093697
RE18107 FBcl0197820
RH62383 FBcl0244837
RH37111 FBcl0244844
RH37317 FBcl0244870
SD08003 FBcl0280210
IP15614 FBcl0303732
CK01.20B.F8 FBcl0397526
79584 FBcl0397395

9 Exons

DB identifier Symbol
FBgn0085407:9 Pvf3:9
FBgn0085407:6 Pvf3:6
FBgn0085407:5 Pvf3:5
FBgn0085407:4 Pvf3:4
FBgn0085407:3 Pvf3:3
FBgn0085407:2 Pvf3:2
FBgn0085407:7 Pvf3:7
FBgn0085407:1 Pvf3:1
FBgn0085407:8 Pvf3:8

4 Transcripts

DB identifier Gene
FBtr0342658 Pvf3
FBtr0112611 Pvf3
FBtr0112612 Pvf3
FBtr0301525 Pvf3

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0112611-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0112612-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0301525-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0342658-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0112611-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0112612-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0301525-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0342658-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
33995 NCBI Entrez Gene identifiers FBgn0085407
60143 BioGRID FBgn0085407

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 2202.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 1117.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 207.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 531.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 495.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 303.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 173.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 60.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 142.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1327.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 463.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 945.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 148.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 126.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 543.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 194.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 174.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 129.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 686.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 1346.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 266.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 603.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 264.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 947.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 149.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 113.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 177.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 474.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 680.0
FBgn0085407 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1028.0

9 Introns

DB identifier
Organism . Name
intron_FBgn0085407:9_FBgn0085407:5 Drosophila melanogaster
intron_FBgn0085407:5_FBgn0085407:4 Drosophila melanogaster
intron_FBgn0085407:4_FBgn0085407:3 Drosophila melanogaster
intron_FBgn0085407:3_FBgn0085407:1 Drosophila melanogaster
intron_FBgn0085407:9_FBgn0085407:6 Drosophila melanogaster
intron_FBgn0085407:6_FBgn0085407:5 Drosophila melanogaster
intron_FBgn0085407:3_FBgn0085407:2 Drosophila melanogaster
intron_FBgn0085407:7_FBgn0085407:6 Drosophila melanogaster
intron_FBgn0085407:8_FBgn0085407:5 Drosophila melanogaster

43 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Cell size regulation Pvf3 none -1.09   19216764
Lipid storage Pvf3 none 1.064307516   19067489
Lipid storage Pvf3 none 0.32221806   19067489
Lipid storage Pvf3 none -0.71966481   19067489
Lipid storage Pvf3 none -3.18044414   19067489
Lipid storage Pvf3 none 0.98160784   19067489
Lipid storage Pvf3 none 0.219133458   19067489
Lipid storage Pvf3 none -1.510925913   19067489
Lipid storage Pvf3 none -0.004995703   19067489
Caspase activation in apoptosis (1) - combinatorial effect with doxorubicin Pvf3 Increased viability with doxorubicin np   17998402
Caspase activation in apoptosis (2) - combinatorial effect with doxorubicin Pvf3 none np   17998402
ERK signaling Pvf3 ERK activation increased moderate   17086199
Cell cycle regulation (2) Pvf3 none np   15616552
Wnt signaling Pvf3 Decreased Wnt reporter activity -1.1   15817814
Cell size and cell-cycle regulation (1) Pvf3 none sp   16496002
Muscle morphogenesis and function (1) Pvf3 none np   20220848
Muscle morphogenesis and function (1) Pvf3 none np   20220848
Muscle morphogenesis and function (1) Pvf3 none np   20220848
Heat nociception (1) Pvf3 none -1.17   21074052
Heat nociception (1) Pvf3 none -1.17   21074052
Heat nociception (1) Pvf3 none -0.62   21074052
Serratia marcescens infection (1) Pvf3 none -1.24   19520911
Serratia marcescens infection (1) Pvf3 none 0.611764705882352   19520911
Serratia marcescens infection (1) Pvf3 none 0.0454545454545454   19520911
Notch pathway regulation (4) Pvf3 none 0   19363474
Notch pathway regulation (4) Pvf3 none 0   19363474
Notch pathway regulation (4) Pvf3 Notum malformation death 2   19363474
Notch pathway regulation (4) Pvf3 Gain of bristles 2   19363474
Notch induced transcription Pvf3 none 2.7425 without Notch stimulation 20959007
Notch induced transcription Pvf3 Upregulation of Notch pathway after Notch stimulation 4.5327 N(delta)ecn Notch stimulation 20959007

0 Submissions