modENCODE |  Help |  blog

Gene : betaCop D. melanogaster

DB identifier  ? FBgn0008635 Secondary Identifier  ? CG6223
Name  ? beta-coatomer protein Source  FlyBase
  • synonyms:
  • FBgn0008635,
  • BcDNA:GH09317,
  • COPI,
  • COPI beta subunit,
  • Beta Cop,
  • BetaCop,
  • BcDNA.GH09317,
  • beta-COP,
  • beta-CopII,
  • CG6223,
  • bcop,
  • FBan0006223

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

10 Alleles

DB identifier Symbol Allele Class Organism
FBal0136157 betaCop[dsRNA.118]   Drosophila melanogaster
FBal0136156 betaCop[dsRNA.221]   Drosophila melanogaster
FBal0136155 betaCop[dsRNA.929]   Drosophila melanogaster
FBal0245318 betaCop[HM04016]   Drosophila melanogaster
FBal0257743 betaCop[HMS01079]   Drosophila melanogaster
FBal0259064 betaCop[KK101977]   Drosophila melanogaster
FBal0286597 betaCop[Scer\UAS.ORF]   Drosophila melanogaster
FBal0148519 betaCop[dsRNA.cLa]   Drosophila melanogaster
FBal0198557 betaCop[GD5005]   Drosophila melanogaster
FBal0275034 betaCop[NIG.6223R]   Drosophila melanogaster

119 Clones

Secondary Identifier DB identifier
AT25975 FBcl0027273
AT27032 FBcl0027345
AT09625 FBcl0027467
AT18805 FBcl0027859
GH17765 FBcl0103071
GH14515 FBcl0106915
GH22624 FBcl0106919
GH22617 FBcl0107715
GH18535 FBcl0107849
GH09317 FBcl0108861
GH21101 FBcl0108883
EK121262 FBcl0116278
EK135620 FBcl0116310
EK089319 FBcl0116316
EK153836 FBcl0116336
EK137519 FBcl0116344
EK136420 FBcl0116394
EK134631 FBcl0116664
EK034329 FBcl0116666
GM27780 FBcl0146662
LD11625 FBcl0152708
LD30451 FBcl0163394
LD43243 FBcl0165254
LP07452 FBcl0180823
LP07946 FBcl0181117
LP06832 FBcl0181154
LP19708 FBcl0181182
LP23755 FBcl0181192
RE38654 FBcl0197707
RE13625 FBcl0198307

6 Exons

DB identifier Symbol
FBgn0008635:6 betaCop:6
FBgn0008635:5 betaCop:5
FBgn0008635:4 betaCop:4
FBgn0008635:3 betaCop:3
FBgn0008635:2 betaCop:2
FBgn0008635:1 betaCop:1

1 Transcripts

DB identifier Gene
FBtr0074576 betaCop

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0074576-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0074576-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
32820 NCBI Entrez Gene identifiers FBgn0008635
59137 BioGRID FBgn0008635

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 4383.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 4498.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 2671.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 5249.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 3601.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 1341.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 4192.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 2880.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 929.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 2379.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 2610.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 2138.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 2648.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 2310.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 2509.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 2234.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 2274.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 2208.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 2101.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 2390.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 2215.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 3416.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 1379.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 2098.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1435.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1690.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 784.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1243.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1648.0
FBgn0008635 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 2238.0

5 Introns

DB identifier
Organism . Name
intron_FBgn0008635:6_FBgn0008635:5 Drosophila melanogaster
intron_FBgn0008635:5_FBgn0008635:4 Drosophila melanogaster
intron_FBgn0008635:4_FBgn0008635:3 Drosophila melanogaster
intron_FBgn0008635:3_FBgn0008635:2 Drosophila melanogaster
intron_FBgn0008635:2_FBgn0008635:1 Drosophila melanogaster

44 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage betaCop Increased lipid droplet area 4.66848814   19067489
Lipid storage betaCop Increased lipid droplet area 4.580810947   19067489
Multipolar division betaCop Centrosome clustering defects weak   18662975
Chlamydia caviae infection betaCop Decreased Chlamydia caviae infection np   17967059
ERK signaling betaCop ERK activation increased strong   17086199
Drosophila C virus infection betaCop Drosophila C virus replication down np   17040126
Hedgehog signaling betaCop Increased Hedgehog reporter activity np   12663920
Cytokinesis regulation betaCop Binucleate cells with decreased viability weak   15547975
Intracellular Listeria monocytogenes infection betaCop Decreased GFP protein expression strong   16020693
L. monocytogenes infection betaCop Fewer infected cells, less vacuolar escape ***   16157870
Hedgehog signaling betaCop Decreased Hedgehog reporter activity -2.32   16311596
Mycobacterial infection (1) - M. fortuitum infection betaCop Decreased M. fortuitum intracellular infection 5.4 measurement after 3 days 16020694
Mycobacterial infection (2) - E. coli phagocytosis betaCop Decreased E. coli phagocytosis np   16020694
Constitutive protein secretion and Golgi organization (1) betaCop Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) betaCop none sp   16496002
Cell size and cell-cycle regulation (1) betaCop none sp   16496002
Candida albicans phagocytosis (1) betaCop Decreased Candida albicans phagocytosis np   16336044
Candida albicans phagocytosis (2) betaCop Decreased Escherichia coli phagocytosis 28   16336044
Candida albicans phagocytosis (3) betaCop Decreased latex beads phagocytosis 34   16336044
Brucella melitensis infection betaCop Decreased viability np   18654626
Lipid storage betaCop Normal/larger sized lipid droplets, more dispersed strong   18408709
Mutant human huntingtin aggregation betaCop Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) betaCop Lethal np   20220848
Muscle morphogenesis and function (1) betaCop Lethal np   20220848
Muscle morphogenesis and function (3) betaCop none np   20220848
Heat nociception (1) betaCop Developmentally lethal -1.17   21074052
Heat nociception (1) betaCop Developmentally lethal -1.17   21074052
Heart development and function (1) betaCop Larval lethal 0.22   20371351
Serratia marcescens infection (1) betaCop Decreased viability after Serratia marcescens infection -3.1060606060606   19520911
Serratia marcescens infection (2) betaCop Decreased viability after Serratia marcescens infection sp   19520911

0 Submissions