modENCODE |  Help |  blog

Protein : FBpp0073433 D. melanogaster

Primary Accession  ? Q9VYS3 Organism . Name  Drosophila melanogaster
MD5 Checksum  0d1c3b90f9acbb265f6b829c72b870e6 UniProt Accession  Q9VYS3
UniProt Name  RENT1_DROME GenBank Identifier  AAF48115
Is UniProt Canonical  true Is Fragment  false
Length  1180 Molecular Weight  129913
Name  Regulator of nonsense transcripts 1 homolog Secondary Identifier  FBpp0073433

Publication Counts Displayer

Uni Prot Comments Displayer

Protein Sequence Displayer

Genomics

1 Genes

DB identifier Secondary Identifier Symbol Name Source Organism
FBgn0030354 CG1559 Upf1 Upf1 FlyBase D. melanogaster

Proteins

Protein --> Gene + chromosomal location and length of the gene.

Interactions

Cytoscape Network Displayer

 

Other

0 Components

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
Dm.3617 UniGene FBpp0073433
NP_572767.1 RefSeq FBpp0073433

3 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Reactome data set  

1 Ec Numbers

Identifier Description
3.6.4.-  

2 Locations


Located On . Primary Identifier
Start End Strand
X 11795274 11798944 -1
X 11795274 11798944 -1

8 Pathways

Identifier Name
109292 Metabolism of mRNA
92152 Metabolism of RNA
104743 mRNA Processing
131272 Nonsense Mediated Decay Independent of the Exon Junction Complex
147596 Nonsense Mediated Decay Enhanced by the Exon Junction Complex
125905 Nonsense-Mediated Decay
105649 Gene Expression
100899 Transcription

2 Protein Domains

DB identifier Name Short Name Type
IPR027417 P-loop containing nucleoside triphosphate hydrolase P-loop_NTPase Domain
IPR018999 RNA helicase UPF1, UPF2-interacting domain RNA-helicase_UPF1_UPF2-interct Domain

2 Transcripts

DB identifier Gene
FBtr0342744 Upf1
FBtr0073596 Upf1