modENCODE |  Help |  blog

Gene : vg D. melanogaster
DB identifier  ? FBgn0003975 Secondary Identifier  ? CG3830
Name  ? vestigial Source  FlyBase
  • synonyms:
  • vg21,
  • vestigal,
  • FBgn0003975,
  • Vestgial,
  • Vestigial,
  • FBan0003830,
  • VG,
  • CG3830
Paste the following link
Lists
This Gene isn't in any lists. Upload a list.

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

430 Alleles

DB identifier Symbol Allele Class Organism
FBal0219406 vg[Scer\FRT.RpL32]   Drosophila melanogaster
FBal0219408 vg[Scer\FRT.CD2.5XQE]   Drosophila melanogaster
FBal0219407 vg[RpL32.PZ]   Drosophila melanogaster
FBal0219409 vg[5XQE.cZa]   Drosophila melanogaster
FBal0219410 vg[Scer\FRT.GFP.5XQE]   Drosophila melanogaster
FBal0219411 vg[5XQE.cZb]   Drosophila melanogaster
FBal0196108 vg[PHE-4]   Drosophila melanogaster
FBal0196109 vg[SDE-1]   Drosophila melanogaster
FBal0196110 vg[SGE-4]   Drosophila melanogaster
FBal0196111 vg[SGE-11]   Drosophila melanogaster
FBal0240570 vg[Scer\UAS.T:Ivir\HA1]   Drosophila melanogaster
FBal0240571 vg[3-9.Scer\UAS]   Drosophila melanogaster
FBal0017874 vg[21] gain of function allele Drosophila melanogaster
FBal0158529 vg[f02736]   Drosophila melanogaster
FBal0040073 vg[28w]   Drosophila melanogaster
FBal0040079 vg[28wpr5]   Drosophila melanogaster
FBal0040080 vg[28wpr6]   Drosophila melanogaster
FBal0040099 vg[a202]   Drosophila melanogaster
FBal0040100 vg[a207]   Drosophila melanogaster
FBal0040102 vg[f38]   Drosophila melanogaster
FBal0040103 vg[f49]   Drosophila melanogaster
FBal0040104 vg[fs1]   Drosophila melanogaster
FBal0040108 vg[x335]   Drosophila melanogaster
FBal0040109 vg[x336]   Drosophila melanogaster
FBal0040110 vg[x347]   Drosophila melanogaster
FBal0040074 vg[28wpr1]   Drosophila melanogaster
FBal0040075 vg[28wpr10]   Drosophila melanogaster
FBal0040081 vg[28wpr7]   Drosophila melanogaster
FBal0017868 vg[1] gain of function allele, hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0017871 vg[12]   Drosophila melanogaster

18 Clones

Secondary Identifier DB identifier
EK092804 FBcl0081078
EK267854 FBcl0082388
EK057114 FBcl0082418
EK187433 FBcl0082456
EK176341 FBcl0082532
EK019124 FBcl0082548
EK009839 FBcl0082580
EK194004 FBcl0082596
RE02247 FBcl0221874
CK01.20D.F11 FBcl0435618
CK01.72A.D3 FBcl0435640
CK01.6C.E12 FBcl0435653
61927 FBcl0435664
109036 FBcl0435649
163518 FBcl0435672
214531.25 FBcl0435676
214255.36 FBcl0436972
50526 FBcl0436990

8 Exons

DB identifier Symbol
FBgn0003975:1 vg:1
FBgn0003975:2 vg:2
FBgn0003975:3 vg:3
FBgn0003975:4 vg:4
FBgn0003975:5 vg:5
FBgn0003975:6 vg:6
FBgn0003975:7 vg:7
FBgn0003975:8 vg:8

1 Transcripts

DB identifier Gene
FBtr0087785 vg

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0087785-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0087785-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name
Subject . Primary Identifier
36421 NCBI Entrez Gene identifiers FBgn0003975
62192 BioGRID FBgn0003975

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier
Submission . Title
Cell Line . Name
Developmental Stage . Name 		Score
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 178.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 188.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 150.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 114.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 38.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 44.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 73.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 45.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 114.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 46.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 36.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 162.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 130.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 104.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 173.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 26.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 128.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 69.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 146.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 109.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 62.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 156.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 122.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 45.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 84.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 144.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 87.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 81.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 162.0
FBgn0003975 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 221.0

7 Introns

DB identifier
Organism . Name
intron_FBgn0003975:1_FBgn0003975:2 Drosophila melanogaster
intron_FBgn0003975:2_FBgn0003975:3 Drosophila melanogaster
intron_FBgn0003975:3_FBgn0003975:4 Drosophila melanogaster
intron_FBgn0003975:4_FBgn0003975:5 Drosophila melanogaster
intron_FBgn0003975:5_FBgn0003975:6 Drosophila melanogaster
intron_FBgn0003975:6_FBgn0003975:7 Drosophila melanogaster
intron_FBgn0003975:7_FBgn0003975:8 Drosophila melanogaster

28 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage vg none 0.047082563   19067489
Lipid storage vg none -0.620738247   19067489
Lipid storage vg none 0.054198976   19067489
Lipid storage vg none -1.587441394   19067489
Lipid storage vg none -0.836228571   19067489
Lipid storage vg none 0.21756398   19067489
Neural outgrowth vg Defasciculation, Excess branching np   18604272
ERK signaling vg ERK activation reduced weak   17086199
Cell size and cell-cycle regulation (1) vg none sp   16496002
Muscle morphogenesis and function (1) vg Flightless np   20220848
Muscle morphogenesis and function (4) vg none np   20220848
Heat nociception (1) vg none -0.38   21074052
Heart development and function (1) vg none 1   20371351
Serratia marcescens infection (1) vg none -0.207792207792207   19520911
Serratia marcescens infection (1) vg Increased viability after Serratia marcescens infection 2   19520911
Serratia marcescens infection (2) vg Increased viability after Serratia marcescens infection sp   19520911
Serratia marcescens infection (4) vg none sp   19520911
Notch pathway regulation (4) vg none 0   19363474
Notch induced transcription vg none 1.7857 N(delta)ecn Notch stimulation 20959007
Notch induced transcription vg Upregulation of Notch pathway after Notch stimulation 1.9025 N(delta)ecn Notch stimulation 20959007
Notch induced transcription vg none -0.52836 without Notch stimulation 20959007
Adiposity regulation (1) vg none -0.376   20074523
RTK-Ras-ERK pathway regulation (1) vg none 0.92 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) vg none 0.06 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) vg none 0.25 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) vg none 0.49 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation vg none -0.26   23263283
Muscle development and maintenance vg none sp  

0 Submissions





© 2002 - 2013 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom