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Gene : Upf2 D. melanogaster

DB identifier  ? FBgn0029992 Secondary Identifier  ? CG2253
Name  ? Upf2 Source  FlyBase
  • synonyms:
  • smg-3,
  • UPF2,
  • FBan0002253,
  • up-frameshift suppressor 2,
  • CG2253,
  • FBgn0029992,
  • unnamed

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23 Alleles

DB identifier Symbol Allele Class Organism
FBal0265818 Upf2[Scer\UAS.cAa]   Drosophila melanogaster
FBal0265819 Upf2[E801R.Scer\UAS]   Drosophila melanogaster
FBal0265820 Upf2[FVRR.Scer\UAS]   Drosophila melanogaster
FBal0245805 Upf2[JF01560]   Drosophila melanogaster
FBal0276933 Upf2[14-01-3M]   Drosophila melanogaster
FBal0276934 Upf2[3-01-3R]   Drosophila melanogaster
FBal0276935 Upf2[7-5A]   Drosophila melanogaster
FBal0276936 Upf2[C41]   Drosophila melanogaster
FBal0276937 Upf2[C51]   Drosophila melanogaster
FBal0276938 Upf2[C2]   Drosophila melanogaster
FBal0276939 Upf2[2-8A]   Drosophila melanogaster
FBal0276940 Upf2[4-5F]   Drosophila melanogaster
FBal0276941 Upf2[C72]   Drosophila melanogaster
FBal0276942 Upf2[3D]   Drosophila melanogaster
FBal0276943 Upf2[C52]   Drosophila melanogaster
FBal0276944 Upf2[13D]   Drosophila melanogaster
FBal0208949 Upf2[GD9763]   Drosophila melanogaster
FBal0264865 Upf2[29AA]   Drosophila melanogaster
FBal0264866 Upf2[14J]   Drosophila melanogaster
FBal0264867 Upf2[Scer\UAS.cMa]   Drosophila melanogaster
FBal0264868 Upf2[25G]   Drosophila melanogaster
FBal0264869 Upf2[+tMa]   Drosophila melanogaster
FBal0273100 Upf2[NIG.2253R]   Drosophila melanogaster

11 Clones

Secondary Identifier DB identifier
EK170647 FBcl0061430
EK027208 FBcl0064126
EK269126 FBcl0079762
EK306954 FBcl0080492
LD15603 FBcl0156589
LD10722 FBcl0156703
RE04053 FBcl0217234
SD07232 FBcl0279582
281611 FBcl0419551
56847 FBcl0419533
164713 FBcl0419555

3 Exons

DB identifier Symbol
FBgn0029992:3 Upf2:3
FBgn0029992:2 Upf2:2
FBgn0029992:1 Upf2:1

1 Transcripts

DB identifier Gene
FBtr0071117 Upf2

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0071117-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0071117-3-prime-utr Drosophila melanogaster

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1 Cross References

Identifier
Source . Name

Subject . Primary Identifier
31724 NCBI Entrez Gene identifiers FBgn0029992

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 360.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 403.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 388.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 290.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 362.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 284.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 852.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 382.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 224.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 426.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 507.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 285.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 409.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 358.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 414.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 350.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 422.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 503.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 320.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 309.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 333.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 395.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 393.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 364.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 360.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 536.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 572.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 513.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 334.0
FBgn0029992 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 308.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0029992:3_FBgn0029992:2 Drosophila melanogaster
intron_FBgn0029992:2_FBgn0029992:1 Drosophila melanogaster

23 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Upf2 none 0.290599326   19067489
Lipid storage Upf2 none 0.02281182   19067489
Hedgehog signaling Upf2 Increased Hedgehog reporter activity 4.78   16311596
Heat nociception (1) Upf2 none -1.17   21074052
Serratia marcescens infection (1) Upf2 none -0.0227272727272727   19520911
Serratia marcescens infection (1) Upf2 Decreased viability after Serratia marcescens infection -2.25714285714285   19520911
Serratia marcescens infection (2) Upf2 none sp   19520911
Serratia marcescens infection (4) Upf2 Decreased viability after Serratia marcescens infection sp   19520911
Serratia marcescens infection (5) Upf2 Viable np   19520911
Notch pathway regulation (4) Upf2 Planar polarity defects, notum malformation migration sp   19363474
Notch induced transcription Upf2 none -0.65694 N(delta)ecn Notch stimulation 20959007
Notch induced transcription Upf2 Downregulation of Notch pathway after Notch stimulation -2.2093 N(delta)ecn Notch stimulation 20959007
Notch induced transcription Upf2 none -0.41629 without Notch stimulation 20959007
Hh pathway regulation Upf2 none -0.146623367239175   17903264
Hh pathway regulation Upf2 none -0.0641678246374117   17903264
Notch pathway regulation (1) Upf2 Downregulation of Notch pathway np   20493818
Notch pathway regulation (2) Upf2 none np en-GAL4 20493818
Notch pathway regulation (2) Upf2 none np en-GAL4 20493818
Notch pathway regulation (3) Upf2 Upregulation of Notch pathway np   20493818
Adiposity regulation (1) Upf2 none -0.278   20074523
Hippo pathway regulation Upf2 none 2.92   23263283
Glycosylation regulation (1) Upf2 none sp   21203496
Huntingtin (Htt) aggregates formation Upf2 Increased formation of mutant Huntingtin (Httex1-Qn) protein aggregates np   20100940

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