modENCODE |  Help |  blog

Gene : TrpA1 D. melanogaster

DB identifier  ? FBgn0035934 Secondary Identifier  ? CG5751
Name  ? Transient receptor potential cation channel A1 ortholog Source  FlyBase
  • synonyms:
  • DmTRPA1,
  • dTRPA,
  • Trp1A,
  • CT18073,
  • dANKTM1,
  • CG5761,
  • ANKTM1,
  • TRPA,
  • TRPA1,
  • Transient receptor potential A1,
  • Transient receptor potential cation channel,
  • transient-receptor-potential A1,
  • dTRPA1,
  • FBan0005751,
  • FBgn0035934,
  • CG5751

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

32 Alleles

DB identifier Symbol Allele Class Organism
FBal0277013 TrpA1[Scer\FRT.stop.Scer\UAS.cSa]   Drosophila melanogaster
FBal0277014 TrpA1[Scer\UAS.cSa]   Drosophila melanogaster
FBal0263683 TrpA1[GAL4]   Drosophila melanogaster
FBal0283999 TrpA1[Ecol\lexAop.cBa]   Drosophila melanogaster
FBal0283470 TrpA1[MI07645]   Drosophila melanogaster
FBal0285582 TrpA1[A.Scer\UAS]   Drosophila melanogaster
FBal0240383 TrpA1[1]   Drosophila melanogaster
FBal0240384 TrpA1[Scer\UAS.cKb]   Drosophila melanogaster
FBal0245382 TrpA1[JF01054]   Drosophila melanogaster
FBal0245645 TrpA1[JF01360]   Drosophila melanogaster
FBal0256968 TrpA1[Scer\UAS.cvPa]   Drosophila melanogaster
FBal0256969 TrpA1[Scer\FRT.stop.Scer\UAS]   Drosophila melanogaster
FBal0256970 TrpA1[Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0256971 TrpA1[Scer\FRT.stop.Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0256972 TrpA1[Scer\FRT.stop.Scer\UAS.T:Disc\RFP-mCherry]   Drosophila melanogaster
FBal0256973 TrpA1[Scer\UAS.T:Disc\RFP-mCherry]   Drosophila melanogaster
FBal0267190 TrpA1[W903]   Drosophila melanogaster
FBal0267191 TrpA1[+t21]   Drosophila melanogaster
FBal0267192 TrpA1[C.Scer\UAS]   Drosophila melanogaster
FBal0264376 TrpA1[Scer\UAS.cKc]   Drosophila melanogaster
FBal0266612 TrpA1[JF02461]   Drosophila melanogaster
FBal0269844 TrpA1[Ecol\lexAop.T:SV40\nls2]   Drosophila melanogaster
FBal0219713 TrpA1[Scer\UAS.cKa]   Drosophila melanogaster
FBal0181159 TrpA1[dsRNA.2872-3605]   Drosophila melanogaster
FBal0264548 TrpA1[Scer\UAS.cKd]   Drosophila melanogaster
FBal0194316 TrpA1[dsRNA.cRa]   Drosophila melanogaster
FBal0208852 TrpA1[GD2375]   Drosophila melanogaster
FBal0220310 TrpA1[ins.5']   Drosophila melanogaster
FBal0220311 TrpA1[ins.3']   Drosophila melanogaster
FBal0220312 TrpA1[+tHa]   Drosophila melanogaster

1 Clones

Secondary Identifier DB identifier
GH03996 FBcl0126549

19 Exons

DB identifier Symbol
FBgn0035934:10 TrpA1:10
FBgn0035934:19 TrpA1:19
FBgn0035934:18 TrpA1:18
FBgn0035934:17 TrpA1:17
FBgn0035934:15 TrpA1:15
FBgn0035934:14 TrpA1:14
FBgn0035934:13 TrpA1:13
FBgn0035934:12 TrpA1:12
FBgn0035934:11 TrpA1:11
FBgn0035934:9 TrpA1:9
FBgn0035934:8 TrpA1:8
FBgn0035934:7 TrpA1:7
FBgn0035934:5 TrpA1:5
FBgn0035934:4 TrpA1:4
FBgn0035934:3 TrpA1:3
FBgn0035934:2 TrpA1:2
FBgn0035934:1 TrpA1:1
FBgn0035934:6 TrpA1:6
FBgn0035934:16 TrpA1:16

5 Transcripts

DB identifier Gene
FBtr0331827 TrpA1
FBtr0331825 TrpA1
FBtr0331826 TrpA1
FBtr0331823 TrpA1
FBtr0331824 TrpA1

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0331823-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0331824-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0331827-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331823-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331824-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331825-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331826-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331827-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

1 Cross References

Identifier
Source . Name

Subject . Primary Identifier
39015 NCBI Entrez Gene identifiers FBgn0035934

9 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 466.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 208.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 462.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 224.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 332.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 184.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 207.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 206.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 173.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 281.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 181.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 481.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 209.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 239.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 153.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 227.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 399.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 262.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 342.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 1237.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 300.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 313.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 297.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 215.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 290.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 507.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 364.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 440.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 331.0
FBgn0035934 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 375.0

20 Introns

DB identifier
Organism . Name
intron_FBgn0035934:19_FBgn0035934:18 Drosophila melanogaster
intron_FBgn0035934:18_FBgn0035934:17 Drosophila melanogaster
intron_FBgn0035934:17_FBgn0035934:15 Drosophila melanogaster
intron_FBgn0035934:15_FBgn0035934:14 Drosophila melanogaster
intron_FBgn0035934:14_FBgn0035934:13 Drosophila melanogaster
intron_FBgn0035934:13_FBgn0035934:12 Drosophila melanogaster
intron_FBgn0035934:12_FBgn0035934:11 Drosophila melanogaster
intron_FBgn0035934:11_FBgn0035934:10 Drosophila melanogaster
intron_FBgn0035934:10_FBgn0035934:9 Drosophila melanogaster
intron_FBgn0035934:9_FBgn0035934:8 Drosophila melanogaster
intron_FBgn0035934:8_FBgn0035934:7 Drosophila melanogaster
intron_FBgn0035934:7_FBgn0035934:5 Drosophila melanogaster
intron_FBgn0035934:5_FBgn0035934:4 Drosophila melanogaster
intron_FBgn0035934:4_FBgn0035934:3 Drosophila melanogaster
intron_FBgn0035934:3_FBgn0035934:2 Drosophila melanogaster
intron_FBgn0035934:2_FBgn0035934:1 Drosophila melanogaster
intron_FBgn0035934:8_FBgn0035934:6 Drosophila melanogaster
intron_FBgn0035934:6_FBgn0035934:5 Drosophila melanogaster
intron_FBgn0035934:16_FBgn0035934:15 Drosophila melanogaster
intron_FBgn0035934:8_FBgn0035934:5 Drosophila melanogaster

12 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage TrpA1 none 0.618872498   19067489
Lipid storage TrpA1 none 1.958194351   19067489
Store-operated calcium influx regulation TrpA1 none np   15866891
Muscle morphogenesis and function (1) TrpA1 Lethal np   20220848
Muscle morphogenesis and function (1) TrpA1 Locomotion defect np   20220848
Heat nociception (1) TrpA1 Increased noxious heat avoidance 3.76   21074052
Heart development and function (1) TrpA1 none 1   20371351
Serratia marcescens infection (1) TrpA1 none -0.185185185185185   19520911
Notch pathway regulation (4) TrpA1 none 0   19363474
Notch pathway regulation (4) TrpA1 Notum malformation death 6   19363474
Adiposity regulation (1) TrpA1 none 0.272   20074523
Hippo pathway regulation TrpA1 none 1.13   23263283

0 Submissions