modENCODE |  Help |  blog

Gene : TfIIS D. melanogaster

DB identifier  ? FBgn0010422 Secondary Identifier  ? CG3710
Name  ? RNA polymerase II elongation factor Source  FlyBase
  • synonyms:
  • FBgn0000474,
  • CG3710,
  • l(2)br52,
  • FBan0003710,
  • br52,
  • TFIISA,
  • FBgn0001982,
  • TFIIS,
  • DmS-II,
  • DmSII,
  • l35Cf,
  • FBgn0010422,
  • RnpSII,
  • transcription cleavage factor IIS,
  • l(2)35Cf,
  • TFS-II,
  • lethal(2)35Cf,
  • BG:DS00929.12

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

9 Alleles

DB identifier Symbol Allele Class Organism
FBal0257780 TfIIS[HMS01117]   Drosophila melanogaster
FBal0181280 TfIIS[dsRNA.cYa]   Drosophila melanogaster
FBal0034982 TfIIS[2]   Drosophila melanogaster
FBal0034981 TfIIS[1]   Drosophila melanogaster
FBal0034980 TfIIS[unspecified]   Drosophila melanogaster
FBal0262819 TfIIS[GL00353]   Drosophila melanogaster
FBal0208770 TfIIS[GD12773]   Drosophila melanogaster
FBal0231099 TfIIS[KK101167]   Drosophila melanogaster
FBal0273924 TfIIS[NIG.3710R]   Drosophila melanogaster

87 Clones

Secondary Identifier DB identifier
Dmel_neb_010298_0089_2991 FBcl0374563
Dmel_dig_008298_0654_3318 FBcl0374564
AT06459 FBcl0040861
EK257458 FBcl0102806
EK045424 FBcl0102824
EK265646 FBcl0102832
EK058330 FBcl0102834
EK058334 FBcl0102836
EK248408 FBcl0102854
EK092948 FBcl0102856
GH16559 FBcl0122585
GM02906 FBcl0143395
GM09514 FBcl0143397
GM03078 FBcl0143398
GM04006 FBcl0143399
LD18436 FBcl0158177
LD15545 FBcl0158183
LD34766 FBcl0172527
LD32510 FBcl0172529
LD33310 FBcl0172541
RE27666 FBcl0219911
RE65844 FBcl0219912
RE16305 FBcl0219913
RE35323 FBcl0219957
RE55416 FBcl0219961
FGC015A08 FBcl0385286
CK01.121C.D8 FBcl0429007
125888 FBcl0429023
162193 FBcl0429029
FGM309E04 FBcl0392776

3 Exons

DB identifier Symbol
FBgn0010422:3 TfIIS:3
FBgn0010422:2 TfIIS:2
FBgn0010422:1 TfIIS:1

2 Transcripts

DB identifier Gene
FBtr0332475 TfIIS
FBtr0080722 TfIIS

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0080722-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0332475-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0080722-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0332475-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
34883 NCBI Entrez Gene identifiers FBgn0010422
60901 BioGRID FBgn0010422

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 519.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 650.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 499.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 502.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 536.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 674.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 336.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 592.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 292.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 890.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 521.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 577.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 523.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 357.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 539.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 565.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 726.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 475.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1083.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 556.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 415.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 545.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 560.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 468.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 554.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1588.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1144.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 725.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 683.0
FBgn0010422 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 646.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0010422:3_FBgn0010422:2 Drosophila melanogaster
intron_FBgn0010422:3_FBgn0010422:1 Drosophila melanogaster

19 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage TfIIS none 1.004998055   19067489
Lipid storage TfIIS none -0.501185392   19067489
Cell size and cell-cycle regulation (1) TfIIS none sp   16496002
Dendrite pattern formation TfIIS none np   16547170
Combinatorial effect with methyl methanesulphonate (2) TfIIS none sp   19543366
Muscle morphogenesis and function (1) TfIIS none np   20220848
Muscle morphogenesis and function (1) TfIIS none np   20220848
Heat nociception (1) TfIIS none -0.93   21074052
Heat nociception (1) TfIIS none -1.17   21074052
Heart development and function (1) TfIIS none 1   20371351
Heart development and function (1) TfIIS none 1   20371351
Serratia marcescens infection (1) TfIIS none -0.0588235294117647   19520911
Serratia marcescens infection (1) TfIIS none 0.135802469135802   19520911
Notch pathway regulation (4) TfIIS none 0   19363474
Notch pathway regulation (4) TfIIS none 0   19363474
Adiposity regulation (1) TfIIS none -0.417   20074523
Adiposity regulation (1) TfIIS none -0.139   20074523
Hippo pathway regulation TfIIS none 0.7   23263283
Glycosylation regulation (1) TfIIS none sp   21203496

0 Submissions