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Gene : SMC1 D. melanogaster

DB identifier  ? FBgn0040283 Secondary Identifier  ? CG6057
Name  ? SMC1 Source  FlyBase
  • synonyms:
  • CG6057,
  • cohesin complex subunit SMC1,
  • Smc1 cohesin subunit,
  • FBan0006057,
  • FBgn0039146,
  • dSMC1,
  • DmSMC1,
  • FBgn0040283,
  • cohesin subunit SMC1,
  • cohesin,
  • Smc1

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12 Alleles

DB identifier Symbol Allele Class Organism
FBal0243250 SMC1[LL01162]   Drosophila melanogaster
FBal0243251 SMC1[Scer\UAS.T:Ivir\HA1]   Drosophila melanogaster
FBal0266258 SMC1[GL00558]   Drosophila melanogaster
FBal0195335 SMC1[exc46]   Drosophila melanogaster
FBal0159852 SMC1[c00402]   Drosophila melanogaster
FBal0257933 SMC1[HMS01340]   Drosophila melanogaster
FBal0286746 SMC1[Scer\UAS.ORF]   Drosophila melanogaster
FBal0286747 SMC1[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0246975 SMC1[Chi.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0208451 SMC1[GD1694]   Drosophila melanogaster
FBal0230559 SMC1[KK100055]   Drosophila melanogaster
FBal0274959 SMC1[NIG.6057R]   Drosophila melanogaster

48 Clones

Secondary Identifier DB identifier
EP20034 FBcl0075551
EP03807 FBcl0075553
GH09621 FBcl0118563
EK174456 FBcl0120522
EK291324 FBcl0120560
EK057003 FBcl0120566
EK185252 FBcl0120572
EK265007 FBcl0120580
EK109909 FBcl0120590
EK198117 FBcl0120594
RE03794 FBcl0214148
SD02122 FBcl0277346
SD18153 FBcl0277375
IP03215 FBcl0323033
RP003557714 FBcl0560585
RP003373689 FBcl0560586
RP003300956 FBcl0560590
RP003469042 FBcl0560593
RP003129122 FBcl0560595
RP003400126 FBcl0560597
RP003578336 FBcl0560598
RP003107612 FBcl0560600
RP003644988 FBcl0560604
RP003643631 FBcl0560607
RP003620386 FBcl0560608
RP003334462 FBcl0560614
RP003656515 FBcl0560640
RP003576205 FBcl0560618
RP003552897 FBcl0560622
RP003070374 FBcl0560624

11 Exons

DB identifier Symbol
FBgn0040283:1 SMC1:1
FBgn0040283:2 SMC1:2
FBgn0040283:3 SMC1:3
FBgn0040283:4 SMC1:4
FBgn0040283:5 SMC1:5
FBgn0040283:6 SMC1:6
FBgn0040283:7 SMC1:7
FBgn0040283:8 SMC1:8
FBgn0040283:9 SMC1:9
FBgn0040283:10 SMC1:10
FBgn0040283:11 SMC1:11

1 Transcripts

DB identifier Gene
FBtr0084541 SMC1

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0084541-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0084541-3-prime-utr Drosophila melanogaster

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2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
42853 NCBI Entrez Gene identifiers FBgn0040283
67787 BioGRID FBgn0040283

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 816.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 794.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 535.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 652.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 846.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 661.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 996.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 774.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 1140.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1020.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 701.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 848.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1015.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 797.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 881.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 516.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 710.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1153.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 725.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 791.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 895.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 797.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 810.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 819.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 668.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 2311.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 583.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1481.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1550.0
FBgn0040283 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1306.0

10 Introns

DB identifier
Organism . Name
intron_FBgn0040283:1_FBgn0040283:2 Drosophila melanogaster
intron_FBgn0040283:2_FBgn0040283:3 Drosophila melanogaster
intron_FBgn0040283:3_FBgn0040283:4 Drosophila melanogaster
intron_FBgn0040283:4_FBgn0040283:5 Drosophila melanogaster
intron_FBgn0040283:5_FBgn0040283:6 Drosophila melanogaster
intron_FBgn0040283:6_FBgn0040283:7 Drosophila melanogaster
intron_FBgn0040283:7_FBgn0040283:8 Drosophila melanogaster
intron_FBgn0040283:8_FBgn0040283:9 Drosophila melanogaster
intron_FBgn0040283:9_FBgn0040283:10 Drosophila melanogaster
intron_FBgn0040283:10_FBgn0040283:11 Drosophila melanogaster

17 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage SMC1 none -0.308442363   19067489
Lipid storage SMC1 none 0.473850789   19067489
Cell size and cell-cycle regulation (1) SMC1 none sp   16496002
Combinatorial effect with methyl methanesulphonate (1) SMC1 none sp   19543366
Muscle morphogenesis and function (1) SMC1 Lethal np   20220848
Muscle morphogenesis and function (1) SMC1 none np   20220848
Heat nociception (1) SMC1 none -1.17   21074052
Heart development and function (1) SMC1 none 1   20371351
Serratia marcescens infection (1) SMC1 none 0.816901408450704   19520911
Notch pathway regulation (4) SMC1 Notum malformation migration 5   19363474
Adiposity regulation (1) SMC1 none -0.15   20074523
RTK-Ras-ERK pathway regulation (1) SMC1 none 0.48 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) SMC1 none -0.55 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) SMC1 none 0.89 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) SMC1 Increased ERK phosphorylation after sSpitz and EGF stimulation 1.7 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation SMC1 none -1.23   23263283
Glycosylation regulation (1) SMC1 none sp   21203496

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