Genomics
Gene Ontology Displayer
Homologue Displayer
Mod Mine G Browse Displayer
Overlapping Features Displayer
Regulatory Regions Displayer
7 Alleles
| DB identifier | Symbol | Allele Class | Organism |
|---|---|---|---|
| FBal0257319 | RpS28b[HMS00635] | Drosophila melanogaster | |
| FBal0286656 | RpS28b[Scer\UAS.ORF] | Drosophila melanogaster | |
| FBal0286657 | RpS28b[Scer\UAS.ORF.T:Ivir\HA1] | Drosophila melanogaster | |
| FBal0208384 | RpS28b[GD15553] | Drosophila melanogaster | |
| FBal0208383 | RpS28b[GD13671] | Drosophila melanogaster | |
| FBal0214758 | RpS28b[GD16844] | Drosophila melanogaster | |
| FBal0236305 | RpS28b[KK109420] | Drosophila melanogaster |
324 Clones
4 UTRs
| Class | DB identifier |
Organism . Name |
|---|---|---|
| FivePrimeUTR | FBtr0071360-5-prime-utr | Drosophila melanogaster |
| FivePrimeUTR | FBtr0343411-5-prime-utr | Drosophila melanogaster |
| ThreePrimeUTR | FBtr0071360-3-prime-utr | Drosophila melanogaster |
| ThreePrimeUTR | FBtr0343411-3-prime-utr | Drosophila melanogaster |
Other
52 Pathways
- Transport of Mature Transcript to Cytoplasm,
- Metabolism of mRNA,
- mRNA Processing,
- Post-Elongation Processing of the Transcript,
- SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs,
- RNA Polymerase II Transcription Elongation,
- Elongation arrest and recovery,
- RNA Polymerase II Transcription Termination,
- Formation of the ternary complex, and subsequently, the 43S complex,
- Processing of Capped Intronless Pre-mRNA,
- Metabolism of proteins,
- Metabolism of RNA,
- Transport of Mature mRNA derived from an Intron-Containing Transcript,
- L13a-mediated translational silencing of Ceruloplasmin expression,
- Transport of Mature mRNAs Derived from Intronless Transcripts,
- Peptide chain elongation,
- SLBP independent Processing of Histone Pre-mRNAs,
- Nonsense Mediated Decay Independent of the Exon Junction Complex,
- RNA Polymerase II Transcription Initiation And Promoter Clearance,
- RNA Polymerase II Transcription Pre-Initiation And Promoter Opening,
- 3' -UTR-mediated translational regulation,
- RNA Polymerase II Pre-transcription Events,
- Cap-dependent Translation Initiation,
- Eukaryotic Translation Initiation,
- RNA Polymerase II Transcription,
- Formation of RNA Pol II elongation complex,
- Nonsense-Mediated Decay,
- Translation,
- Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S,
- RNA Pol II CTD phosphorylation and interaction with CE,
- mRNA Capping,
- RNA Polymerase II Transcription Initiation,
- Processing of Intronless Pre-mRNAs,
- Transport of Mature mRNA Derived from an Intronless Transcript,
- Transcription,
- Formation of the Early Elongation Complex,
- Eukaryotic Translation Elongation,
- Translation initiation complex formation,
- Nonsense Mediated Decay Enhanced by the Exon Junction Complex,
- Post-Elongation Processing of Intronless pre-mRNA,
- Transport of the SLBP independent Mature mRNA,
- SRP-dependent cotranslational protein targeting to membrane,
- Ribosomal scanning and start codon recognition,
- Transport of the SLBP Dependant Mature mRNA,
- Gene Expression,
- Recycling of eIF2:GDP,
- Cleavage of Growing Transcript in the Termination Region,
- Processing of Capped Intron-Containing Pre-mRNA,
- GTP hydrolysis and joining of the 60S ribosomal subunit,
- Eukaryotic Translation Termination,
- RNA Polymerase II Promoter Escape,
- Formation of a pool of free 40S subunits
2 Cross References
| Identifier |
Source . Name |
Subject . Primary Identifier |
|---|---|---|
| 31897 | NCBI Entrez Gene identifiers | FBgn0030136 |
| 58339 | BioGRID | FBgn0030136 |
11 Data Sets
| Name | URL |
|---|---|
| FlyBase data set for Drosophila melanogaster | |
| Swiss-Prot data set | http://ca.expasy.org/sprot |
| Drosophila 12 Genomes Consortium homology | |
| GenomeRNAi data set | |
| TreeFam data set | |
| Panther data set | |
| IntAct interactions data set | |
| BioGRID interaction data set | http://www.thebiogrid.org/downloads.php |
| GO Annotation from FlyBase | |
| FlyBase fasta data set for Drosophila melanogaster | |
| Drosophila Cell Line and Developmental Stage Gene and Exon Scores |
55 Expression Scores
2 Introns
| DB identifier |
Organism . Name |
|---|---|
| intron_FBgn0030136:1_FBgn0030136:2 | Drosophila melanogaster |
| intron_FBgn0030136:1_FBgn0030136:3 | Drosophila melanogaster |
40 RNAi Results
| Screen | Gene | Phenotype | Score | Conditions | PubMed ID |
|---|---|---|---|---|---|
| Lipid storage | RpS28b | none | 4.385600547 | 19067489 | |
| Lipid storage | RpS28b | none | -0.629082875 | 19067489 | |
| Lipid storage | RpS28b | none | 0.776291938 | 19067489 | |
| Lipid storage | RpS28b | none | -1.050789991 | 19067489 | |
| Drosophila C virus infection | RpS28b | Drosophila C virus replication down | np | 17040126 | |
| Intracellular Listeria monocytogenes infection | RpS28b | Increased GFP protein expression | moderate | 16020693 | |
| Drosophila C virus infection | RpS28b | Drosophila C virus infection reduced | np | 15713840 | |
| Hedgehog signaling | RpS28b | Decreased Hedgehog reporter activity | -2.03 | 16311596 | |
| Constitutive protein secretion and Golgi organization (1) | RpS28b | Decreased horseradish peroxidase protein expression | sp | 16452979 | |
| Cell size and cell-cycle regulation (1) | RpS28b | none | sp | 16496002 | |
| Combinatorial effect with methyl methanesulphonate (2) | RpS28b | Synthetic lethal with methyl methanesulphonate | sp | 19543366 | |
| Muscle morphogenesis and function (1) | RpS28b | Lethal | np | 20220848 | |
| Muscle morphogenesis and function (1) | RpS28b | Lethal | np | 20220848 | |
| Muscle morphogenesis and function (1) | RpS28b | Lethal | np | 20220848 | |
| Muscle morphogenesis and function (1) | RpS28b | none | np | 20220848 | |
| Muscle morphogenesis and function (3) | RpS28b | Split myofibril, fading Z-line | np | 20220848 | |
| Heat nociception (1) | RpS28b | none | 0.12 | 21074052 | |
| Heat nociception (1) | RpS28b | Developmentally lethal | -0.26 | 21074052 | |
| Heart development and function (1) | RpS28b | Pupal lethal | 0 | 20371351 | |
| Serratia marcescens infection (1) | RpS28b | none | -0.951612903225806 | 19520911 | |
| Serratia marcescens infection (1) | RpS28b | none | -0.109375 | 19520911 | |
| Serratia marcescens infection (1) | RpS28b | none | 1.18 | 19520911 | |
| Notch pathway regulation (4) | RpS28b | Completely lethal (before pupal) | sp | 19363474 | |
| Notch pathway regulation (4) | RpS28b | Completely lethal (before pupal) | sp | 19363474 | |
| Notch pathway regulation (4) | RpS28b | Completely lethal (before pupal) | sp | 19363474 | |
| Notch pathway regulation (4) | RpS28b | none | 0 | 19363474 | |
| Hh pathway regulation | RpS28b | Downregulation of Hh pathway | -0.561812539606239 | 17903264 | |
| Adiposity regulation (1) | RpS28b | none | -0.299 | 20074523 | |
| Adiposity regulation (1) | RpS28b | none | -0.024 | 20074523 | |
| Adiposity regulation (1) | RpS28b | Decreased triglyceride expression | 0.586 | 20074523 |
