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 ProjectExperiments 

 Chromatin Function

PI: Jason Lieb

Nucleosome mapping


This experiment has 2 data submissions. The experimental factors are strain, developmental stage and temperature.

1 GBrowse track Get Data

Chromatin ChIP-chip


This experiment has 78 data submissions. The experimental factors are strain, antibody, developmental stage and temperature. 		BindingSite: 48517

8 GBrowse tracks Get Data


Chromosomal Proteins

PI: Gary Karpen

Genomic Distributions of Histone Modifications


This experiment has 116 data submissions. The experimental factors are strain, antibody, cell line, tissue and developmental stage. 		BindingSite: 761178

6 GBrowse tracks Get Data



Histone Variants

PI: Steven Henikoff

Genome-wide Chromatin Profiling


This experiment has 36 data submissions. The experimental factors are strain, cell line, sodium chloride concentration, biochemical fraction, developmental stage and extraction time.

7 GBrowse tracks Get Data


Origins of Replication

PI: David MacAlpine

CGH drosophila cell lines


This experiment has 1 data submission. The experimental factor is cell line.

1 GBrowse track Get Data

CNV in Drosophila cell lines


This experiment has 3 data submissions. The experimental factor is cell line.

1 GBrowse track Get Data

Replication Timing Characterization


This experiment has 3 data submissions. The experimental factor is cell line.

1 GBrowse track Get Data

MacAlpine Early Origin of Replication Identification


This experiment has 3 data submissions. The experimental factor is cell line. 		OriginOfReplication: 1520

2 GBrowse tracks Get Data

Differential Replication of Polytene Chromosomes


This experiment has 4 data submissions. The experimental factors are strain, tissue and developmental stage. 		CopyNumberVariation: 149

1 GBrowse track Get Data

Genome-wide localization of essential replication initiators


This experiment has 6 data submissions. The experimental factor is antibody. 		BindingSite: 8927
ProteinBindingSite: 84312

10 GBrowse tracks Get Data


Regulatory Elements in C. elegans

PI: Michael Snyder

ChIP-Seq Identification of C. elegans TF Binding Sites


This experiment has 49 data submissions. The experimental factors are target gene, strain, developmental stage and temperature. 		BindingSite: 275520

7 GBrowse tracks Get Data


Regulatory Elements in Drosophila

PI: Kevin White

Chromatin Binding Site Mapping


This experiment has 278 data submissions. The experimental factors are antibody, strain, cell line, threshold and developmental stage. 		BindingSite: 10456
ProteinBindingSite: 1011756
HistoneBindingSite: 12968
TFBindingSite: 31284

62 GBrowse tracks Get Data

RNA-seq support of the ChIP data


This experiment has 12 data submissions. The experimental factors are strain and developmental stage.

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Small and microRNAs

PI: Eric Lai

Small RNA identification


This experiment has 62 data submissions. The experimental factors are strain, cell line, tissue and developmental stage.

24 GBrowse tracks Get Data


The 3' UTRome

PI: Fabio Piano

Encyclopedia of C. elegans 3'UTRs and their regulatory elements


This experiment has 40 data submissions. The experimental factors are strain, tissue, developmental stage and temperature. 		Gene: 20220
Exon: 21355
MRNA: 31137
ThreePrimeRACEClone: 2700
PolyASite: 35382
CDS: 23792
EST: 2694
ThreePrimeRST: 2700
ThreePrimeUST: 2700
ThreePrimeUTR: 24055

58 GBrowse tracks Get Data

Small RNA expression in C. elegans embryos


This experiment has 6 data submissions. The experimental factors are fixation state, strain, fixative, developmental stage and temperature.

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The C. elegans Transcriptome

PI: Robert Waterston

Identification of small RNAs in C. elegans


This experiment has 7 data submissions. The experimental factors are strain and developmental stage.

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Identification of transcribed sequences under pathogenic bacterial growth conditions with expression profile maps


This experiment has 6 data submissions. The experimental factors are strain, food, exposure time and developmental stage. 		TranscriptRegion: 261696

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Changes in expression of small RNAs during aging in C. elegans


This experiment has 7 data submissions. The experimental factors are days post-L4, strain, temperature and developmental stage. 		ExperimentalFeature: 465

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Identification of tissue and stage-specific transcribed sequences with expression profile maps


This experiment has 40 data submissions. The experimental factors are antibody, strain, tissue, developmental stage and temperature. 		TranscriptRegion: 1630565

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Intron Confirmation in C. elegans


This experiment has 6 data submissions. The experimental factors are outer reverse primer, inner forward primer, strain, outer forward primer, inner reverse primer, reverse primer and developmental stage. 		Intron: 10284
EST: 6855

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Definition of comprehensive set of C. elegans transcripts and expression for various stages and conditions


This experiment has 53 data submissions. The experimental factors are strain, food, exposure time, developmental stage and temperature. 		TSS: 314286
ExperimentalFeature: 6826759
Exon: 4458116
OverlappingESTSet: 1611337
MRNA: 25028
Transcript: 1071311
SL1AcceptorSite: 253226
PolyASite: 238179
Intron: 2859156
CDS: 387696
TranscriptionEndSite: 258882
SL2AcceptorSite: 66411

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The Drosophila Transcriptome

PI: Sue Celniker

Annotation of Drosophila splice junctions by RNA-seq


This experiment has 30 data submissions. 		ExperimentalFeature: 5236710
ExonRegion: 3005431
Intron: 1745570
TranscriptRegion: 1745570

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Cap Analysis of Gene Expression


This experiment has 1 data submission. The experimental factors are strain and developmental stage.

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Short read sequencing of fly mRNA


This experiment has 1 data submission. The experimental factors are strain and developmental stage.

1 GBrowse track Get Data

RT-PCR


This experiment has 5 data submissions. The experimental factor is cell line. 		MRNA: 1688
EST: 1360

9 GBrowse tracks Get Data

Paired End RNA-Seq of Drosophila Cell Lines


This experiment has 8 data submissions. The experimental factor is cell line.

8 GBrowse tracks Get Data

Gene Model Prediction


This experiment has 1 data submission. 		Exon: 308394
Gene: 14659
MRNA: 43857
OverlappingESTSet: 47162
ExonRegion: 48747
CDS: 220003
FivePrimeUTR: 60196
StartCodon: 39559
ThreePrimeUTR: 41005
CDNA: 16678
StopCodon: 39433
TranscriptRegion: 80157
EST: 346679

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5' RACE


This experiment has 6 data submissions. The experimental factors are strain and developmental stage. 		MRNA: 7707
EST: 1187953

7 GBrowse tracks Get Data

Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq


This experiment has 12 data submissions. The experimental factors are strain and developmental stage.

1 GBrowse track Get Data

Transcriptional Profiling of additional Drosophila species with RNA-Seq


This experiment has 2 data submissions. The experimental factors are strain, tissue and developmental stage.

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C-tailed RNA-Seq of Drosophila Cell lines and stages


This experiment has 6 data submissions. The experimental factors are strain, cell line and developmental stage.

5 GBrowse tracks Get Data

Developmental Stage Timecourse Transcriptional Profiling with RNA-Seq


This experiment has 31 data submissions. The experimental factors are strain and developmental stage.

30 GBrowse tracks Get Data

Confirmation of Drosophila transcripts by full-length cDNA screening


This experiment has 1 data submission. The experimental factor is cDNA library. 		CDNA: 1055

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RNA made in Bloomington


This experiment has 4 data submissions. The experimental factors are strain, cell line, tissue and developmental stage.

9 GBrowse tracks Get Data

Identification of transcribed sequences with expression profile maps


This experiment has 78 data submissions. The experimental factors are strain, cell line, tissue and developmental stage. 		TranscriptRegion: 3425616

49 GBrowse tracks Get Data

RNAi of RNA splicing factors in D. melanogaster


This experiment has 27 data submissions. The experimental factors are RNAi reagent and cell line.

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Fly Worm All submissions




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