modENCODE |  Help |  blog

GO Term : GO:0000404 heteroduplex DNA loop binding GO

Namespace  molecular_function Obsolete  false
description  Interacting selectively and non-covalently with DNA containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration.

1 Data Sets

Name URL
GO Annotation from RefGenome  

1 Ontology

Name
GO

2 Ontology Annotations


Subject . Secondary Identifier

Subject . Name

Subject . Symbol

Ontology Term . Identifier

Ontology Term . Name
CG4215 spellchecker1 spel1 GO:0000404 heteroduplex DNA loop binding
  msh-2 GO:0000404 heteroduplex DNA loop binding

12 Parents

Identifier Name
GO:0003674 molecular_function
GO:0005488 binding
GO:0003676 nucleic acid binding
GO:1901363 heterocyclic compound binding
GO:0097159 organic cyclic compound binding
GO:0003677 DNA binding
GO:0000217 DNA secondary structure binding
GO:0043566 structure-specific DNA binding
GO:0000404 heteroduplex DNA loop binding
GO:0032135 DNA insertion or deletion binding
GO:0030983 mismatched DNA binding
GO:0003690 double-stranded DNA binding

11 Relations

Relationship
Parent Term . Name

Parent Term . Identifier

Child Term . Name

Child Term . Identifier
is_a DNA secondary structure binding GO:0000217 heteroduplex DNA loop binding GO:0000404
is_a DNA insertion or deletion binding GO:0032135 heteroduplex DNA loop binding GO:0000404
is_a mismatched DNA binding GO:0030983 heteroduplex DNA loop binding GO:0000404
is_a organic cyclic compound binding GO:0097159 heteroduplex DNA loop binding GO:0000404
is_a molecular_function GO:0003674 heteroduplex DNA loop binding GO:0000404
is_a DNA binding GO:0003677 heteroduplex DNA loop binding GO:0000404
is_a binding GO:0005488 heteroduplex DNA loop binding GO:0000404
is_a nucleic acid binding GO:0003676 heteroduplex DNA loop binding GO:0000404
is_a structure-specific DNA binding GO:0043566 heteroduplex DNA loop binding GO:0000404
is_a heterocyclic compound binding GO:1901363 heteroduplex DNA loop binding GO:0000404
is_a double-stranded DNA binding GO:0003690 heteroduplex DNA loop binding GO:0000404

1 Synonyms

Name Type
loop DNA binding related_synonym