modENCODE |  Help |  blog

Gene : vps2 D. melanogaster

DB identifier  ? FBgn0039402 Secondary Identifier  ? CG14542
Name  ? vps2 Source  FlyBase
  • synonyms:
  • Did4,
  • FBan0014542,
  • dvps2,
  • FBgn0039402,
  • NEST:bs02f06,
  • FBgn0045428,
  • CG14542,
  • Vps2,
  • vacuolar protein sorting 2,
  • DmVPS2

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

8 Alleles

DB identifier Symbol Allele Class Organism
FBal0241180 vps2[GS11024]   Drosophila melanogaster
FBal0230476 vps2[PP6]   Drosophila melanogaster
FBal0211848 vps2[CB02373]   Drosophila melanogaster
FBal0200856 vps2[GD8363]   Drosophila melanogaster
FBal0288716 vps2[2]   Drosophila melanogaster
FBal0288717 vps2[NIG.14542R]   Drosophila melanogaster
FBal0288718 vps2[Scer\UAS.cAa]   Drosophila melanogaster
FBal0279027 vps2[HMS01911]   Drosophila melanogaster

40 Clones

Secondary Identifier DB identifier
DPiM_RH72336 FBcl0740881
534034 FBcl0408118
ESG019a.E21_D03 FBcl0000162
AT13090 FBcl0036025
AT16678 FBcl0036029
bs02f06 FBcl0055593
EC15019 FBcl0070533
EN10061 FBcl0099763
GH16325 FBcl0130271
LP19524 FBcl0189361
RE45180 FBcl0230507
RE59786 FBcl0230509
RE63991 FBcl0230521
RE48282 FBcl0230564
RE74611 FBcl0230699
RH55225 FBcl0268620
RH34323 FBcl0268693
RH44892 FBcl0268703
RH12808 FBcl0268717
RH38930 FBcl0268720
RH52358 FBcl0268728
RH54495 FBcl0268730
RH24166 FBcl0268734
RH26414 FBcl0268735
RH56062 FBcl0268737
RH13107 FBcl0268738
RH66601 FBcl0268745
RH72336 FBcl0268750
RH15969 FBcl0268754
UT01916 FBcl0292940

2 Exons

DB identifier Symbol
FBgn0039402:1 vps2:1
FBgn0039402:2 vps2:2

1 Transcripts

DB identifier Gene
FBtr0084967 vps2

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0084967-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0084967-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
43164 NCBI Entrez Gene identifiers FBgn0039402
68064 BioGRID FBgn0039402

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 582.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 1050.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 515.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 749.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 525.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 1216.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 764.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1527.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 1289.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1240.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1430.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 596.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 807.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1218.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 989.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 637.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 615.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1081.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1786.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 1049.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1480.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1042.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 782.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1120.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 745.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 875.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 211.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 386.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 378.0
FBgn0039402 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 512.0

1 Introns

DB identifier
Organism . Name
intron_FBgn0039402:1_FBgn0039402:2 Drosophila melanogaster

27 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage vps2 Increased lipid droplet area 2.735643013   19067489
Lipid storage vps2 Increased lipid droplet area 11.70396476   19067489
Mycobacterial infection (1) - M. fortuitum infection vps2 Decreased M. fortuitum intracellular infection 3.2 measurement after 3 days 16020694
Constitutive protein secretion and Golgi organization (1) vps2 Decreased horseradish peroxidase protein expression sp   16452979
Constitutive protein secretion and Golgi organization (2) vps2 none np   16452979
Cell size and cell-cycle regulation (1) vps2 none sp   16496002
M. smegmatis infection vps2 Increased M. smegmatis infection np   18287038
Muscle morphogenesis and function (1) vps2 Lethal np   20220848
Heat nociception (1) vps2 Developmentally lethal 0   21074052
Serratia marcescens infection (1) vps2 none -0.853658536585365   19520911
Notch pathway regulation (4) vps2 Completely lethal (before pupal) sp   19363474
Notch induced transcription vps2 Downregulation of Notch pathway after Notch stimulation -4.2351 N(delta)ecn Notch stimulation 20959007
Notch induced transcription vps2 Upregulation of Notch pathway after Notch stimulation 2.4645 N(delta)ecn Notch stimulation 20959007
Notch induced transcription vps2 none -5.0609 without Notch stimulation 20959007
Self-renewal and differentiation in neural stem cells vps2 GFP aggregates number, GFP aggregates size, lethal sp   21549331
Notch pathway regulation (1) vps2 Upregulation of Notch pathway np   20493818
Notch pathway regulation (3) vps2 Upregulation of Notch pathway np   20493818
Notch pathway regulation (4) vps2 Lethal very strong en-GAL4 20493818
RTK-Ras-ERK pathway regulation (1) vps2 none 0.87 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) vps2 none -0.83 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) vps2 Decreased ERK phosphorylation after sSpitz and EGF stimulation -2.06 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) vps2 none -1.48 30 minutes sSpitz stimulation 22028469
Wnt proteins secretion vps2 none 1.7   22094269
Hippo pathway regulation vps2 none 0.31   23263283
Glycosylation regulation (1) vps2 Increased alpha1,3-fucose Chp glycosylation sp   21203496
Glycosylation regulation (2) vps2 Effect on Chp glycosylation np   21203496
Glycosylation regulation (3) vps2 Effect on Chp glycosylation np   21203496

0 Submissions