modENCODE |  Help |  blog

Gene : Sec16 D. melanogaster
DB identifier  ? FBgn0052654 Secondary Identifier  ? CG32654
Name  ? Sec16 Source  FlyBase
  • synonyms:
  • CG32654,
  • sec26,
  • dSec16,
  • FBgn0030404,
  • FBgn0061391,
  • FBgn0030405,
  • BcDNA:RE70141,
  • FBan0032654,
  • CG18079,
  • FBgn0052654,
  • CG2551,
  • sec16
Paste the following link
Lists
This Gene is in one list:
Fly sperm proteome genes (383)

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

4 Alleles

DB identifier Symbol Allele Class Organism
FBal0259077 Sec16[KK102010]   Drosophila melanogaster
FBal0203417 Sec16[GD15016]   Drosophila melanogaster
FBal0213983 Sec16[GD15015]   Drosophila melanogaster
FBal0273144 Sec16[NIG.2551R]   Drosophila melanogaster

53 Clones

Secondary Identifier DB identifier
DMG4-chrX.23.005.pred.a FBcl0383890
214345.1 FBcl0412302
bs84e04 FBcl0047039
EP21328 FBcl0074525
EP13719 FBcl0074529
EP02464 FBcl0074547
EP04753 FBcl0074563
EP09842 FBcl0074567
EP18845 FBcl0074569
EN09659 FBcl0091059
GH04191 FBcl0118273
EK155645 FBcl0126912
EK045647 FBcl0126946
EK175413 FBcl0126954
EK269942 FBcl0126958
EK228223 FBcl0126982
EK267911 FBcl0126990
EK138413 FBcl0126994
EK183727 FBcl0127000
EK068204 FBcl0127022
EK102725 FBcl0127046
EK156135 FBcl0127084
EK044805 FBcl0127098
EK200935 FBcl0127206
LP06346 FBcl0185180
RE73060 FBcl0214032
RE37191 FBcl0214034
RE57507 FBcl0214134
RE62824 FBcl0214152
RE70141 FBcl0214159

19 Exons

DB identifier Symbol
FBgn0052654:1 Sec16:1
FBgn0052654:4 Sec16:4
FBgn0052654:5 Sec16:5
FBgn0052654:6 Sec16:6
FBgn0052654:7 Sec16:7
FBgn0052654:8 Sec16:8
FBgn0052654:9 Sec16:9
FBgn0052654:11 Sec16:11
FBgn0052654:12 Sec16:12
FBgn0052654:14 Sec16:14
FBgn0052654:16 Sec16:16
FBgn0052654:17 Sec16:17
FBgn0052654:18 Sec16:18
FBgn0052654:10 Sec16:10
FBgn0052654:13 Sec16:13
FBgn0052654:3 Sec16:3
FBgn0052654:2 Sec16:2
FBgn0052654:15 Sec16:15
FBgn0052654:19 Sec16:19

6 Transcripts

DB identifier Gene
FBtr0340104 Sec16
FBtr0340105 Sec16
FBtr0340106 Sec16
FBtr0113444 Sec16
FBtr0310304 Sec16
FBtr0113445 Sec16

12 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0113445-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0113444-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0340104-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0340105-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0340106-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0310304-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0113445-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0113444-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0340104-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0340105-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0340106-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0310304-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name
Subject . Primary Identifier
32209 NCBI Entrez Gene identifiers FBgn0052654
58607 BioGRID FBgn0052654

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier
Submission . Title
Cell Line . Name
Developmental Stage . Name 		Score
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 1046.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 751.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 739.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1118.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 877.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 639.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1908.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1413.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 696.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1054.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1270.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1018.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1104.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 716.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 855.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 893.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 1045.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1141.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 663.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 736.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 988.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1345.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 780.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1280.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1033.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 3649.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1703.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1019.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 893.0
FBgn0052654 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1316.0

22 Introns

DB identifier
Organism . Name
intron_FBgn0052654:1_FBgn0052654:4 Drosophila melanogaster
intron_FBgn0052654:4_FBgn0052654:6 Drosophila melanogaster
intron_FBgn0052654:6_FBgn0052654:7 Drosophila melanogaster
intron_FBgn0052654:7_FBgn0052654:8 Drosophila melanogaster
intron_FBgn0052654:8_FBgn0052654:9 Drosophila melanogaster
intron_FBgn0052654:9_FBgn0052654:11 Drosophila melanogaster
intron_FBgn0052654:11_FBgn0052654:12 Drosophila melanogaster
intron_FBgn0052654:12_FBgn0052654:14 Drosophila melanogaster
intron_FBgn0052654:14_FBgn0052654:16 Drosophila melanogaster
intron_FBgn0052654:16_FBgn0052654:17 Drosophila melanogaster
intron_FBgn0052654:17_FBgn0052654:18 Drosophila melanogaster
intron_FBgn0052654:4_FBgn0052654:5 Drosophila melanogaster
intron_FBgn0052654:5_FBgn0052654:6 Drosophila melanogaster
intron_FBgn0052654:9_FBgn0052654:10 Drosophila melanogaster
intron_FBgn0052654:10_FBgn0052654:13 Drosophila melanogaster
intron_FBgn0052654:3_FBgn0052654:4 Drosophila melanogaster
intron_FBgn0052654:10_FBgn0052654:14 Drosophila melanogaster
intron_FBgn0052654:2_FBgn0052654:4 Drosophila melanogaster
intron_FBgn0052654:10_FBgn0052654:12 Drosophila melanogaster
intron_FBgn0052654:14_FBgn0052654:15 Drosophila melanogaster
intron_FBgn0052654:15_FBgn0052654:17 Drosophila melanogaster
intron_FBgn0052654:17_FBgn0052654:19 Drosophila melanogaster

18 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Sec16 none 0.773014764   19067489
Lipid storage Sec16 none 1.852098731   19067489
Lipid storage Sec16 none 5.332759184   19067489
Lipid storage Sec16 none -0.307136716   19067489
Lipid storage Sec16 none -0.106848301   19067489
Lipid storage Sec16 none 0.119891413   19067489
Constitutive protein secretion and Golgi organization (1) Sec16 Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) Sec16 none sp   16496002
Muscle morphogenesis and function (1) Sec16 none np   20220848
Heart development and function (1) Sec16 none 1   20371351
Notch pathway regulation (4) Sec16 none 0   19363474
Akt-TOR pathway negative feedback regulation Sec16 none -2.4 10 min insulin stimulation 20585550
Blood cell homeostasis regulation (1) Sec16 none np   20540764
Blood cell homeostasis regulation (2) Sec16 none np   20540764
Secretory pathway regulation Sec16 Decreased BiP signal peptide and firefly luciferase fusion protein expression < -2   19942856
Hippo pathway regulation Sec16 none -0.19   23263283
Glycosylation regulation (1) Sec16 none sp   21203496
Glycosylation regulation (1) Sec16 Decreased Chp protein expression np   21203496

0 Submissions





© 2002 - 2013 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom