modENCODE |  Help |  blog

Gene : RpS27A D. melanogaster

DB identifier  ? FBgn0003942 Secondary Identifier  ? CG5271
Name  ? Ribosomal protein S27A Source  FlyBase
  • synonyms:
  • Ubiquitin fusion 80,
  • Ubiq,
  • Ubiquitin,
  • CG5271,
  • UB3-D,
  • FBan0005271,
  • FBgn0002728,
  • male female sterile 31,
  • mfs(2)48,
  • Ubi-f80,
  • Ubiquitin-monomeric,
  • FBgn0064114,
  • FBgn0003942,
  • l(2)04820,
  • DUb80,
  • FBgn0010585,
  • mfs(2)31,
  • l(2)31Ei,
  • Ubi-m,
  • mfs48,
  • RpS27A

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

10 Alleles

DB identifier Symbol Allele Class Organism
FBal0008071 RpS27A[04820]   Drosophila melanogaster
FBal0065995 RpS27A[P]   Drosophila melanogaster
FBal0286611 RpS27A[Scer\UAS.ORF]   Drosophila melanogaster
FBal0286612 RpS27A[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0012230 RpS27A[mfs31]   Drosophila melanogaster
FBal0262806 RpS27A[GL00340]   Drosophila melanogaster
FBal0208381 RpS27A[GD10725]   Drosophila melanogaster
FBal0214756 RpS27A[GD17218]   Drosophila melanogaster
FBal0236261 RpS27A[KK109360]   Drosophila melanogaster
FBal0274599 RpS27A[NIG.5271R]   Drosophila melanogaster

324 Clones

Secondary Identifier DB identifier
FGH127A02 FBcl0388521
ESG0112c.B21.1_C11 FBcl0001689
ESG0118d.B21_H10 FBcl0002153
ESG0113a.B21_H05 FBcl0002243
ESG0117c.B21_B08 FBcl0003305
UUGC0549 FBcl0005015
Nfly-032 FBcl0006199
ESG0119d.B21_E09 FBcl0013733
EC28279 FBcl0066363
EC31713 FBcl0066369
EN05145 FBcl0095177
EN02431 FBcl0095179
EN02448 FBcl0095181
EK156932 FBcl0100208
GH14570 FBcl0135441
GH12288 FBcl0135561
GH12840 FBcl0135565
GH02481 FBcl0135641
GH09590 FBcl0135643
GH23248 FBcl0135659
GH12242 FBcl0135707
GH08938 FBcl0135713
GH16377 FBcl0136055
GM06141 FBcl0141055
GM13516 FBcl0147352
GM12563 FBcl0147353
LD23823 FBcl0170984
LD37779 FBcl0178447
LD25049 FBcl0178485
LD39675 FBcl0178488

3 Exons

DB identifier Symbol
FBgn0003942:1 RpS27A:1
FBgn0003942:2 RpS27A:2
FBgn0003942:3 RpS27A:3

1 Transcripts

DB identifier Gene
FBtr0080016 RpS27A

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0080016-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0080016-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

238 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
34420 NCBI Entrez Gene identifiers FBgn0003942
60502 BioGRID FBgn0003942

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 15763.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 19155.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 22556.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 22992.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 18959.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 25334.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 10596.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 17074.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 23472.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 10533.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 12210.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 18892.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 14968.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 13497.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 19736.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 13763.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 11340.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 10286.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 20710.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 16702.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 20099.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 11874.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 10240.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 10267.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 10603.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 13369.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 12524.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 14051.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 13670.0
FBgn0003942 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 14353.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0003942:1_FBgn0003942:2 Drosophila melanogaster
intron_FBgn0003942:2_FBgn0003942:3 Drosophila melanogaster

23 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpS27A Increased lipid droplet area 2.772868341   19067489
Lipid storage RpS27A Increased lipid droplet area 2.285311122   19067489
ERK signaling RpS27A ERK activation reduced weak   17086199
Drosophila C virus infection RpS27A Drosophila C virus replication down np   17040126
Intracellular Listeria monocytogenes infection RpS27A Increased GFP protein expression moderate   16020693
Drosophila C virus infection RpS27A Drosophila C virus infection reduced np   15713840
Hedgehog signaling RpS27A Decreased Hedgehog reporter activity -2.14   16311596
Constitutive protein secretion and Golgi organization (1) RpS27A Decreased horseradish peroxidase protein expression sp   16452979
Candida albicans phagocytosis (1) RpS27A none np   16336044
Microtubule assembly and organization RpS27A none np   18463163
Combinatorial effect with methyl methanesulphonate (2) RpS27A Synthetic lethal with methyl methanesulphonate sp   19543366
Mutant human huntingtin aggregation RpS27A Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) RpS27A Lethal np   20220848
Muscle morphogenesis and function (1) RpS27A Lethal np   20220848
Heart development and function (1) RpS27A none 0   20371351
Serratia marcescens infection (1) RpS27A none -3.53061224489795   19520911
Notch pathway regulation (4) RpS27A Completely lethal (before pupal) sp   19363474
Notch pathway regulation (4) RpS27A Completely lethal (before pupal) sp   19363474
RTK-Ras-ERK pathway regulation (1) RpS27A Decreased ERK phosphorylation after EGF stimulation -2.31 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) RpS27A Decreased ERK phosphorylation after EGF stimulation -4.36 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpS27A none 1.11 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpS27A Increased ERK phosphorylation after sSpitz and EGF stimulation 2.87 30 minutes sSpitz stimulation 22028469
Glycosylation regulation (1) RpS27A Lethal np   21203496

0 Submissions