modENCODE |  Help |  blog

Gene : RpA-70 D. melanogaster

DB identifier  ? FBgn0010173 Secondary Identifier  ? CG9633
Name  ? Replication Protein A 70 Source  FlyBase
  • synonyms:
  • i164,
  • Ssb-70,
  • Single stranded-binding protein 70,
  • CG9633,
  • FBan0009633,
  • D-SSB,
  • RP-A,
  • DRP-A,
  • RPA 70 kDa,
  • DmRPA,
  • Drosophila Replication Protein A,
  • RPA1,
  • RPA70,
  • D-RPA70,
  • RPA 70,
  • FBgn0010173,
  • RPA,
  • Rpa-70,
  • dmrpa1

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

9 Alleles

DB identifier Symbol Allele Class Organism
FBal0258873 RpA-70[KK101022]   Drosophila melanogaster
FBal0159879 RpA-70[c01306]   Drosophila melanogaster
FBal0262816 RpA-70[GL00350]   Drosophila melanogaster
FBal0239973 RpA-70[MB09710]   Drosophila melanogaster
FBal0287391 RpA-70[Scer\UAS.ORF]   Drosophila melanogaster
FBal0287392 RpA-70[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0208321 RpA-70[GD4228]   Drosophila melanogaster
FBal0241595 RpA-70[G5479]   Drosophila melanogaster
FBal0276494 RpA-70[NIG.9633R]   Drosophila melanogaster

100 Clones

Secondary Identifier DB identifier
ESG019b.E21.2_B04 FBcl0000862
EK252403 FBcl0004556
EK118245 FBcl0004596
EK104933 FBcl0006782
EK166315 FBcl0006978
EK281355 FBcl0007086
EK252240 FBcl0007126
EK234642 FBcl0007146
EK187902 FBcl0007186
EK257628 FBcl0007226
ESG012b.TE.2_F11 FBcl0008893
EN11731 FBcl0102149
GM07873 FBcl0143788
LD10710 FBcl0152626
LD17095 FBcl0152657
LD19648 FBcl0152704
LD04815 FBcl0152714
LD40420 FBcl0165091
LD23223 FBcl0165207
LD42320 FBcl0165261
LD34643 FBcl0165336
LP19920 FBcl0180952
LP10989 FBcl0181135
RE39060 FBcl0198148
RE37888 FBcl0198261
RE42222 FBcl0198390
RE07832 FBcl0198398
RE47783 FBcl0198562
RE61187 FBcl0198582
RE20455 FBcl0198587

4 Exons

DB identifier Symbol
FBgn0010173:4 RpA-70:4
FBgn0010173:3 RpA-70:3
FBgn0010173:2 RpA-70:2
FBgn0010173:1 RpA-70:1

1 Transcripts

DB identifier Gene
FBtr0081867 RpA-70

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0081867-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0081867-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
40972 NCBI Entrez Gene identifiers FBgn0010173
66153 BioGRID FBgn0010173

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 2147.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 2312.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 3090.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 2614.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 2907.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 3011.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 3370.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 2097.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 887.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 2788.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 2873.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1626.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 2606.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1822.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 2497.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 2830.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 2296.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 2266.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 2269.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 2680.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 2996.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 2889.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 3162.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1679.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1563.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 4176.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 780.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1936.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1806.0
FBgn0010173 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1399.0

3 Introns

DB identifier
Organism . Name
intron_FBgn0010173:4_FBgn0010173:3 Drosophila melanogaster
intron_FBgn0010173:3_FBgn0010173:2 Drosophila melanogaster
intron_FBgn0010173:2_FBgn0010173:1 Drosophila melanogaster

25 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpA-70 none -3.696365728   19067489
Lipid storage RpA-70 none -0.157890668   19067489
Cell size and cell-cycle regulation (1) RpA-70 Decreased G1 DNA content sp   16496002
Cell size and cell-cycle regulation (2) RpA-70 none 1.319   16496002
Cell size and cell-cycle regulation (3) RpA-70 none 453   16496002
Cell size and cell-cycle regulation (4) RpA-70 Increased number of mitotic cells 0.5   16496002
Mitosis RpA-70 Chromosome misalignment np   17412918
Combinatorial effect with methyl methanesulphonate (2) RpA-70 Synthetic lethal with methyl methanesulphonate sp   19543366
Muscle morphogenesis and function (1) RpA-70 Lethal np   20220848
Muscle morphogenesis and function (1) RpA-70 Lethal np   20220848
Heat nociception (1) RpA-70 Developmentally lethal 0.98   21074052
Heat nociception (1) RpA-70 Increased noxious heat avoidance 2.33   21074052
Heat nociception (2) RpA-70 none 29.66666667   21074052
Heart development and function (1) RpA-70 Adult lethal 0.5   20371351
Serratia marcescens infection (1) RpA-70 none -0.754098360655737   19520911
Notch pathway regulation (4) RpA-70 Notum malformation death 7   19363474
Notch pathway regulation (4) RpA-70 Completely lethal (pupal) sp   19363474
G2-M DNA damage checkpoint regulation (2) RpA-70 Increased histone H3 phosphorylation with bleocin 57.27 with bleocin 21205937
G2-M DNA damage checkpoint regulation (2) RpA-70 Increased histone H3 phosphorylation with doxorubicin 30.61 with doxorubicin 21205937
G2-M DNA damage checkpoint regulation (2) RpA-70 none 23.49 with etoposide 21205937
G2-M DNA damage checkpoint regulation (2) RpA-70 Increased histone H3 phosphorylation after X-ray exposure 59.04 X-ray exposure 21205937
Adiposity regulation (1) RpA-70 none -0.17   20074523
S2 cell spreading RpA-70 none np   21041442
Hippo pathway regulation RpA-70 none 0.08   23263283
Glycosylation regulation (1) RpA-70 none sp   21203496

0 Submissions