modENCODE |  Help |  blog

Gene : nkd D. melanogaster

DB identifier  ? FBgn0002945 Secondary Identifier  ? CG11614
Name  ? naked cuticle Source  FlyBase
  • synonyms:
  • FBgn0036841,
  • FBgn0002945,
  • FBgn0036840,
  • Naked cuticle,
  • CG18224,
  • Nkd,
  • CG11614,
  • FBan0011614,
  • Naked

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

60 Alleles

DB identifier Symbol Allele Class Organism
FBal0178663 nkd[f04961]   Drosophila melanogaster
FBal0104474 nkd[04869a]   Drosophila melanogaster
FBal0219562 nkd[NBg.Scer\UAS.T:Myr-Src64B-GA,T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0219561 nkd[NBg.Scer\UAS.T:Myr-Src64B,T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0219563 nkd[SrcRBg.Scer\UAS.T:Myr-Src64B,T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0086398 nkd[unspecified]   Drosophila melanogaster
FBal0013028 nkd[6]   Drosophila melanogaster
FBal0056445 nkd[89E] loss of function allele Drosophila melanogaster
FBal0013024 nkd[2] loss of function allele Drosophila melanogaster
FBal0122944 nkd[dsRNA.cRa]   Drosophila melanogaster
FBal0104473 nkd[42J1]   Drosophila melanogaster
FBal0013023 nkd[1]   Drosophila melanogaster
FBal0013027 nkd[5]   Drosophila melanogaster
FBal0013025 nkd[3]   Drosophila melanogaster
FBal0013026 nkd[4]   Drosophila melanogaster
FBal0146980 nkd[D213V.Scer\UAS]   Drosophila melanogaster
FBal0104470 nkd[hs.T:Hsap\MYC]   Drosophila melanogaster
FBal0104471 nkd[Scer\UAS.cZa]   Drosophila melanogaster
FBal0104472 nkd[Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0146979 nkd[EFX.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0193306 nkd[DeltaR1S.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0146981 nkd[D201A.Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0146977 nkd[NIN3.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0146975 nkd[R1S.Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0146978 nkd[NBam.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0146976 nkd[NR1.Scer\UAS.T:Hsap\MYC]   Drosophila melanogaster
FBal0193304 nkd[DeltaEFX.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0193305 nkd[DeltaYS.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0193307 nkd[DeltaBBg.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster
FBal0193308 nkd[DeltaRBg.Scer\UAS.T:Avic\GFP-EGFP]   Drosophila melanogaster

83 Clones

Secondary Identifier DB identifier
DPiM_LP04418 FBcl0741623
EK196644 FBcl0137698
EK193231 FBcl0137700
EK133849 FBcl0137702
EK046930 FBcl0137704
EK239037 FBcl0137706
EK130923 FBcl0137708
EK162837 FBcl0137710
EK227661 FBcl0137712
EK291461 FBcl0137714
EK111733 FBcl0137716
EK208701 FBcl0137718
EK068201 FBcl0137720
EK242333 FBcl0137722
EK251702 FBcl0137724
EK057736 FBcl0137726
EK123804 FBcl0137728
EK061615 FBcl0137730
EK193510 FBcl0137732
EK293605 FBcl0137734
EK181907 FBcl0137934
EK073047 FBcl0137938
EK066923 FBcl0137942
EK066915 FBcl0137946
EK060451 FBcl0137948
EK233627 FBcl0137952
EK290515 FBcl0137954
EK231824 FBcl0137958
EK017552 FBcl0137966
EK005104 FBcl0137968

6 Exons

DB identifier Symbol
FBgn0002945:6 nkd:6
FBgn0002945:5 nkd:5
FBgn0002945:4 nkd:4
FBgn0002945:2 nkd:2
FBgn0002945:1 nkd:1
FBgn0002945:3 nkd:3

3 Transcripts

DB identifier Gene
FBtr0332650 nkd
FBtr0332649 nkd
FBtr0075039 nkd

6 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0075039-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0332649-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0332650-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0075039-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0332649-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0332650-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
44843 NCBI Entrez Gene identifiers FBgn0002945
69321 BioGRID FBgn0002945

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 243.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 189.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 250.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 332.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 233.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 142.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 150.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 209.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 121.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 204.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 128.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 290.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 159.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 278.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 348.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 737.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 872.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 103.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 247.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 149.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1344.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 169.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 235.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 128.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 167.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 356.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1582.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 2429.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 2075.0
FBgn0002945 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 2093.0

7 Introns

DB identifier
Organism . Name
intron_FBgn0002945:6_FBgn0002945:5 Drosophila melanogaster
intron_FBgn0002945:5_FBgn0002945:4 Drosophila melanogaster
intron_FBgn0002945:4_FBgn0002945:2 Drosophila melanogaster
intron_FBgn0002945:2_FBgn0002945:1 Drosophila melanogaster
intron_FBgn0002945:4_FBgn0002945:1 Drosophila melanogaster
intron_FBgn0002945:5_FBgn0002945:3 Drosophila melanogaster
intron_FBgn0002945:3_FBgn0002945:1 Drosophila melanogaster

21 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage nkd none -0.977105286   19067489
Lipid storage nkd none -0.018546727   19067489
Neural outgrowth nkd Short axons np   18604272
Wnt signaling nkd Increased Wnt reporter activity 6.9   15817814
Cell size and cell-cycle regulation (1) nkd none sp   16496002
Muscle morphogenesis and function (1) nkd none np   20220848
Muscle morphogenesis and function (1) nkd none np   20220848
Heat nociception (1) nkd none -0.36   21074052
Heat nociception (1) nkd none 0.59   21074052
Heart development and function (1) nkd none 1   20371351
Heart development and function (1) nkd none 1   20371351
Serratia marcescens infection (1) nkd none 0.0789473684210526   19520911
Notch pathway regulation (4) nkd none 0   19363474
Notch pathway regulation (4) nkd none 0   19363474
Adiposity regulation (1) nkd none -0.226   20074523
RTK-Ras-ERK pathway regulation (1) nkd none 0.51 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) nkd none -0.31 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) nkd none 0.51 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) nkd Decreased ERK phosphorylation after sSpitz and EGF stimulation -1.59 30 minutes sSpitz stimulation 22028469
Wnt proteins secretion nkd Upregulation of Wg pathway 2.7   22094269
Hippo pathway regulation nkd none 1.61   23263283

0 Submissions