modENCODE |  Help |  blog

Gene : ph-d D. melanogaster
DB identifier  ? FBgn0004860 Secondary Identifier  ? CG3895
Name  ? polyhomeotic distal Source  FlyBase
  • synonyms:
  • DROZFP,
  • PHD,
  • FBan0003895,
  • FBgn0026824,
  • phm,
  • Polyhomeotic,
  • PH-d,
  • CG3895,
  • EG:BACN25G24.3,
  • FBgn0004860,
  • polyhomeotic proximal,
  • PH,
  • ph[D],
  • FBgn0003077,
  • Polyhomeotic-distal
Paste the following link
Lists
This Gene is in one list:
Fly classII (760)

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

52 Alleles

DB identifier Symbol Allele Class Organism
FBal0245905 ph-d[JF01705]   Drosophila melanogaster
FBal0013728 ph-d[9]   Drosophila melanogaster
FBal0285559 ph-d[unspecified]   Drosophila melanogaster
FBal0123757 ph-d[BG02139]   Drosophila melanogaster
FBal0060949 ph-d[+tSa]   Drosophila melanogaster
FBal0013725 ph-d[5]   Drosophila melanogaster
FBal0013761 ph-d[k]   Drosophila melanogaster
FBal0013763 ph-d[Ting]   Drosophila melanogaster
FBal0013723 ph-d[2]   Drosophila melanogaster
FBal0013733 ph-d[102]   Drosophila melanogaster
FBal0039748 ph-d[10a]   Drosophila melanogaster
FBal0059977 ph-d[600]   Drosophila melanogaster
FBal0013750 ph-d[400]   Drosophila melanogaster
FBal0013747 ph-d[301]   Drosophila melanogaster
FBal0013760 ph-d[br]   Drosophila melanogaster
FBal0013746 ph-d[222]   Drosophila melanogaster
FBal0013738 ph-d[208]   Drosophila melanogaster
FBal0013729 ph-d[10]   Drosophila melanogaster
FBal0013748 ph-d[303]   Drosophila melanogaster
FBal0013732 ph-d[101]   Drosophila melanogaster
FBal0032411 ph-d[103]   Drosophila melanogaster
FBal0013734 ph-d[203]   Drosophila melanogaster
FBal0013727 ph-d[8]   Drosophila melanogaster
FBal0013726 ph-d[6]   Drosophila melanogaster
FBal0124972 ph-d[a.cBa]   Drosophila melanogaster
FBal0013745 ph-d[220]   Drosophila melanogaster
FBal0013749 ph-d[305]   Drosophila melanogaster
FBal0013737 ph-d[207]   Drosophila melanogaster
FBal0086383 ph-d[5PS] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0013739 ph-d[209]   Drosophila melanogaster

6 Clones

Secondary Identifier DB identifier
LD01444 FBcl0159204
MIP12539 FBcl0718459
IP03987 FBcl0318135
CK01.40C.G4 FBcl0454945
191201 FBcl0454921
107731 FBcl0454874

6 Exons

DB identifier Symbol
FBgn0004860:5 ph-d:5
FBgn0004860:4 ph-d:4
FBgn0004860:3 ph-d:3
FBgn0004860:2 ph-d:2
FBgn0004860:1 ph-d:1
FBgn0004860:6 ph-d:6

2 Transcripts

DB identifier Gene
FBtr0070433 ph-d
FBtr0112843 ph-d

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0070433-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0112843-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070433-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0112843-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name
Subject . Primary Identifier
44889 NCBI Entrez Gene identifiers FBgn0004860
69361 BioGRID FBgn0004860

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier
Submission . Title
Cell Line . Name
Developmental Stage . Name 		Score
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 848.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 811.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 803.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 692.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1153.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 420.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1426.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 627.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 667.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1149.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1242.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 392.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1101.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1136.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1273.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 950.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 2303.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 862.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 948.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 851.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1720.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1540.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 595.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 735.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 437.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1288.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 2170.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 2651.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1900.0
FBgn0004860 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 2006.0

5 Introns

DB identifier
Organism . Name
intron_FBgn0004860:5_FBgn0004860:4 Drosophila melanogaster
intron_FBgn0004860:4_FBgn0004860:3 Drosophila melanogaster
intron_FBgn0004860:3_FBgn0004860:2 Drosophila melanogaster
intron_FBgn0004860:2_FBgn0004860:1 Drosophila melanogaster
intron_FBgn0004860:6_FBgn0004860:4 Drosophila melanogaster

15 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage ph-d none 1.527410985   19067489
Lipid storage ph-d none -0.507316959   19067489
Lipid storage ph-d none -1.056119762   19067489
Lipid storage ph-d none -1.97324887   19067489
Wnt signaling ph-d Increased Wnt reporter activity 6.3   15817814
Hedgehog signaling ph-d Decreased Hedgehog reporter activity -2.24   16311596
Cell size and cell-cycle regulation (1) ph-d none sp   16496002
Dendrite pattern formation ph-d none np   16547170
Combinatorial effect with methyl methanesulphonate (1) ph-d Synthetic lethal with methyl methanesulphonate sp   19543366
Combinatorial effect with methyl methanesulphonate (2) ph-d none sp   19543366
Hh pathway regulation ph-d none -0.0918058205136698   17903264
Hh pathway regulation ph-d none -0.0343123643709382   17903264
RTK-Ras-ERK pathway regulation (2) ph-d none 1.16 30 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) ph-d Increased ERK phosphorylation after sSpitz and EGF stimulation 1.91 10 minutes sSpitz stimulation 22028469
Hippo pathway regulation ph-d none -0.69   23263283

0 Submissions





© 2002 - 2013 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom