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Gene : RfC38 D. melanogaster

DB identifier  ? FBgn0028700 Secondary Identifier  ? CG6258
Name  ? Replication factor C 38kD subunit Source  FlyBase
  • synonyms:
  • DNA replication factor, 38k subunit,
  • DmRFC5,
  • FBan0006258,
  • FBgn0027894,
  • l(2)rfc38,
  • l(2)k13807,
  • Rfc38,
  • FBgn0028700,
  • BcDNA:LD06837,
  • n(2)k13807,
  • CG6258

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6 Alleles

DB identifier Symbol Allele Class Organism
FBal0101566 RfC38[k13807]   Drosophila melanogaster
FBal0181974 RfC38[f07177]   Drosophila melanogaster
FBal0181975 RfC38[e00704]   Drosophila melanogaster
FBal0208265 RfC38[GD4101]   Drosophila melanogaster
FBal0247261 RfC38[9]   Drosophila melanogaster
FBal0275053 RfC38[NIG.6258R]   Drosophila melanogaster

39 Clones

Secondary Identifier DB identifier
bs27c11 FBcl0054629
EK199129 FBcl0093954
EK165957 FBcl0093972
EK233747 FBcl0094654
GM08039 FBcl0142573
GM20577 FBcl0147238
LD19089 FBcl0162573
LD06837 FBcl0162598
LD13549 FBcl0162601
LD13565 FBcl0162602
LD13576 FBcl0162603
LD16086 FBcl0162604
LD41983 FBcl0178506
LD40413 FBcl0178507
LD27721 FBcl0178509
LD45506 FBcl0178510
RE51367 FBcl0238098
RE63777 FBcl0238133
RE02765 FBcl0238136
RE67855 FBcl0238137
RE29841 FBcl0238138
RE63933 FBcl0238144
RE49467 FBcl0238145
RE64083 FBcl0238146
RE33372 FBcl0238147
RE37383 FBcl0238148
RE49180 FBcl0238151
RE63087 FBcl0238152
SD21444 FBcl0287781
SD17338 FBcl0287783

2 Exons

DB identifier Symbol
FBgn0028700:2 RfC38:2
FBgn0028700:1 RfC38:1

1 Transcripts

DB identifier Gene
FBtr0080225 RfC38

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0080225-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0080225-3-prime-utr Drosophila melanogaster

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2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
34550 NCBI Entrez Gene identifiers FBgn0028700
60612 BioGRID FBgn0028700

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 306.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 470.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 249.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 257.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 443.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 398.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 154.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 188.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 164.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 340.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 301.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 253.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 342.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 270.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 409.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 295.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 230.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 381.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 407.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 281.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 346.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 400.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 351.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 183.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 281.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1089.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1113.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 441.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 494.0
FBgn0028700 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 294.0

1 Introns

DB identifier
Organism . Name
intron_FBgn0028700:2_FBgn0028700:1 Drosophila melanogaster

13 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Cell size and cell-cycle regulation (1) RfC38 none sp   16496002
Combinatorial effect with methyl methanesulphonate (2) RfC38 none sp   19543366
Muscle morphogenesis and function (1) RfC38 none np   20220848
Muscle morphogenesis and function (1) RfC38 none np   20220848
Heat nociception (1) RfC38 none -1.17   21074052
Heart development and function (1) RfC38 none 1   20371351
Serratia marcescens infection (1) RfC38 none -0.764705882352941   19520911
Notch pathway regulation (4) RfC38 Loss of bristles, bristle morphology defects sp   19363474
Notch pathway regulation (4) RfC38 none 0   19363474
Self-renewal and differentiation in neural stem cells RfC38 GFP aggregates number, GFP aggregates size, neuroblast larger cell size, neuroblast cell shape, ganglion mother cell shorter lineages, ganglion mother cell shape, neuroblast underproliferation, lethal sp   21549331
Adiposity regulation (1) RfC38 none 0.106   20074523
Hippo pathway regulation RfC38 none 0.54   23263283
Glycosylation regulation (1) RfC38 none sp   21203496

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