modENCODE |  Help |  blog

Gene : CG6439 D. melanogaster

DB identifier  ? FBgn0038922 Secondary Identifier  ? CG6439
Source  FlyBase
  • synonyms:
  • FBgn0038922,
  • CG6439,
  • Idh,
  • FBan0006439,
  • Isocitrate dehydrogenase

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

6 Alleles

DB identifier Symbol Allele Class Organism
FBal0211887 CG6439[CB03836]   Drosophila melanogaster
FBal0185220 CG6439[f07670]   Drosophila melanogaster
FBal0148184 CG6439[EY00276]   Drosophila melanogaster
FBal0232126 CG6439[KK102960]   Drosophila melanogaster
FBal0205077 CG6439[GD6219]   Drosophila melanogaster
FBal0275136 CG6439[NIG.6439R]   Drosophila melanogaster

130 Clones

Secondary Identifier DB identifier
AT18840 FBcl0033677
AT03128 FBcl0033679
AT30341 FBcl0033451
AT25182 FBcl0033461
AT05409 FBcl0033469
AT01211 FBcl0033471
AT30944 FBcl0033475
AT06865 FBcl0033481
AT19969 FBcl0033491
AT08669 FBcl0033495
AT19993 FBcl0033499
AT01465 FBcl0033503
AT10091 FBcl0033519
AT10802 FBcl0033523
AT24074 FBcl0033531
AT23356 FBcl0033535
AT17807 FBcl0033537
AT01095 FBcl0033541
AT30496 FBcl0033545
AT04259 FBcl0033549
AT28777 FBcl0033553
AT23751 FBcl0033563
AT12276 FBcl0033567
AT13544 FBcl0033571
AT16837 FBcl0033575
AT10844 FBcl0033603
AT22343 FBcl0033613
AT06847 FBcl0033617
AT17411 FBcl0033619
AT30630 FBcl0033621

8 Exons

DB identifier Symbol
FBgn0038922:7 CG6439:7
FBgn0038922:6 CG6439:6
FBgn0038922:5 CG6439:5
FBgn0038922:4 CG6439:4
FBgn0038922:3 CG6439:3
FBgn0038922:1 CG6439:1
FBgn0038922:8 CG6439:8
FBgn0038922:2 CG6439:2

2 Transcripts

DB identifier Gene
FBtr0300788 CG6439
FBtr0084190 CG6439

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0084190-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0300788-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0084190-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0300788-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
42586 NCBI Entrez Gene identifiers FBgn0038922
67547 BioGRID FBgn0038922

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 1685.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 2228.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1609.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1885.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1528.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 1129.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1371.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1257.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 355.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1533.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1419.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 762.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1357.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1085.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1120.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 729.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 1254.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1333.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1677.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 623.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1291.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1053.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 1126.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1073.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 771.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 4627.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 3148.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1992.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1324.0
FBgn0038922 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1222.0

7 Introns

DB identifier
Organism . Name
intron_FBgn0038922:8_FBgn0038922:6 Drosophila melanogaster
intron_FBgn0038922:6_FBgn0038922:5 Drosophila melanogaster
intron_FBgn0038922:5_FBgn0038922:4 Drosophila melanogaster
intron_FBgn0038922:4_FBgn0038922:3 Drosophila melanogaster
intron_FBgn0038922:3_FBgn0038922:2 Drosophila melanogaster
intron_FBgn0038922:7_FBgn0038922:6 Drosophila melanogaster
intron_FBgn0038922:3_FBgn0038922:1 Drosophila melanogaster

14 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage CG6439 none 0.022468771   19067489
Lipid storage CG6439 none -1.269985016   19067489
Cell size and cell-cycle regulation (1) CG6439 none sp   16496002
Cell size and cell-cycle regulation (1) CG6439 none sp   16496002
Heart development and function CG6439 Heart tube assembly defects, heart patterning defects np   14684833
Microtubule assembly and organization CG6439 none np   18463163
Muscle morphogenesis and function (1) CG6439 Weak flyer np   20220848
Heat nociception (1) CG6439 none -1.17   21074052
Heart development and function (1) CG6439 none 1   20371351
Serratia marcescens infection (1) CG6439 none 1.14814814814814   19520911
Notch pathway regulation (4) CG6439 none 0   19363474
Adiposity regulation (1) CG6439 none -0.245   20074523
Hippo pathway regulation CG6439 none -0.9   23263283
Glycosylation regulation (1) CG6439 none sp   21203496

0 Submissions