modENCODE |  Help |  blog

Gene : skpA D. melanogaster

DB identifier  ? FBgn0025637 Secondary Identifier  ? CG16983
Name  ? skpA Source  FlyBase
  • synonyms:
  • dSKP1,
  • l(1)G0058,
  • spkA,
  • l(1)G0389,
  • FBgn0026694,
  • FBgn0066820,
  • FBgn0028296,
  • dSkpA,
  • FBgn0025637,
  • l(1)G0109,
  • FBgn0066819,
  • Skp,
  • l(1)G0037,
  • FBgn0026706,
  • anon-WO03040301.234,
  • EG:115C2.4,
  • FBan0016983,
  • Skp1-related gene A,
  • dSkp-1,
  • SKP1,
  • anon-WO03040301.238,
  • SKPA,
  • CG16983,
  • FBgn0040198,
  • FBgn0066818,
  • anon-WO03040301.236

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

30 Alleles

DB identifier Symbol Allele Class Organism
FBal0240314 skpA[HM05185]   Drosophila melanogaster
FBal0257341 skpA[HMS00657]   Drosophila melanogaster
FBal0257472 skpA[HMS00791]   Drosophila melanogaster
FBal0095199 skpA[EP1423]   Drosophila melanogaster
FBal0150253 skpA[EP1216a]   Drosophila melanogaster
FBal0096840 skpA[G0058]   Drosophila melanogaster
FBal0096852 skpA[G0037]   Drosophila melanogaster
FBal0100288 skpA[G0389]   Drosophila melanogaster
FBal0103769 skpA[G0109]   Drosophila melanogaster
FBal0129068 skpA[PG49]   Drosophila melanogaster
FBal0248383 skpA[109]   Drosophila melanogaster
FBal0248384 skpA[174]   Drosophila melanogaster
FBal0143217 skpA[+tMa]   Drosophila melanogaster
FBal0177899 skpA[4] loss of function allele Drosophila melanogaster
FBal0177900 skpA[3] loss of function allele Drosophila melanogaster
FBal0177901 skpA[2] loss of function allele Drosophila melanogaster
FBal0177903 skpA[+t4]   Drosophila melanogaster
FBal0154581 skpA[dsRNA.cPa]   Drosophila melanogaster
FBal0177902 skpA[1] loss of function allele Drosophila melanogaster
FBal0143215 skpA[J6]   Drosophila melanogaster
FBal0143214 skpA[dsRNA.cKa]   Drosophila melanogaster
FBal0143216 skpA[G49]   Drosophila melanogaster
FBal0286991 skpA[Scer\UAS.ORF]   Drosophila melanogaster
FBal0286992 skpA[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0210595 skpA[GD9251]   Drosophila melanogaster
FBal0210596 skpA[GD16179]   Drosophila melanogaster
FBal0229300 skpA[UM-8160-3]   Drosophila melanogaster
FBal0229301 skpA[GG01472]   Drosophila melanogaster
FBal0231577 skpA[KK101948]   Drosophila melanogaster
FBal0272473 skpA[NIG.16983R]   Drosophila melanogaster

127 Clones

Secondary Identifier DB identifier
DPiM_HL01263 FBcl0741311
ESG0111c.B21.1_E05 FBcl0001032
ESG0116d.B21_G04 FBcl0002397
EK074161 FBcl0010192
EK072943 FBcl0010434
EK271164 FBcl0010572
EK293010 FBcl0011740
EK238614 FBcl0012342
EK187037 FBcl0013574
bs36b04 FBcl0051901
EC01852 FBcl0067383
EC13795 FBcl0067385
EC26759 FBcl0067389
EC27513 FBcl0067395
HL01263 FBcl0150182
LD03188 FBcl0159628
LD07173 FBcl0159638
LD19283 FBcl0159643
LD12269 FBcl0159645
LD19231 FBcl0159649
LD12368 FBcl0159654
LD12372 FBcl0159657
LD02301 FBcl0159659
LD40675 FBcl0174607
LD38326 FBcl0174618
LD28620 FBcl0174621
LP08886 FBcl0188060
LP09540 FBcl0188062
LP02056 FBcl0188080
RE33916 FBcl0225666

9 Exons

DB identifier Symbol
FBgn0025637:7 skpA:7
FBgn0025637:9 skpA:9
FBgn0025637:8 skpA:8
FBgn0025637:5 skpA:5
FBgn0025637:4 skpA:4
FBgn0025637:3 skpA:3
FBgn0025637:2 skpA:2
FBgn0025637:1 skpA:1
FBgn0025637:6 skpA:6

8 Transcripts

DB identifier Gene
FBtr0070129 skpA
FBtr0070127 skpA
FBtr0070128 skpA
FBtr0070125 skpA
FBtr0070123 skpA
FBtr0070126 skpA
FBtr0070124 skpA
FBtr0100530 skpA

16 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0070129-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070128-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070127-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070126-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070125-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070124-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0070123-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0100530-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070129-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070128-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070127-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070126-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070125-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070124-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070123-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0100530-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
31016 NCBI Entrez Gene identifiers FBgn0025637
57584 BioGRID FBgn0025637

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 2604.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 2754.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1976.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 2663.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 2359.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 2737.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1216.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1387.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 2439.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 3111.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 3093.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1326.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1973.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 2732.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 3284.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 2342.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 2509.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1124.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 3237.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 2788.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 2405.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 2756.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 2515.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 2653.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1684.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 5478.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 5544.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 5596.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 4447.0
FBgn0025637 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 4878.0

7 Introns

DB identifier
Organism . Name
intron_FBgn0025637:7_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:8_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:5_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:4_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:3_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:2_FBgn0025637:9 Drosophila melanogaster
intron_FBgn0025637:1_FBgn0025637:9 Drosophila melanogaster

45 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage skpA none 1.203765179   19067489
Lipid storage skpA none 0   19067489
ERK signaling skpA ERK activation increased weak   17086199
Wnt signaling skpA Increased Wnt reporter activity 7.9   15817814
Cell size and cell-cycle regulation (1) skpA Decreased G1 DNA content sp   16496002
Cell size and cell-cycle regulation (2) skpA none 1.333   16496002
Cell size and cell-cycle regulation (3) skpA none 450   16496002
NFAT signaling skpA Decreased NFAT translocation 1   16511445
Microtubule assembly and organization skpA Increased centrosome number np   18463163
Centriol duplication skpA Increased centrosome number 4.6 +/- 4.6   19171756
Mutant human huntingtin aggregation skpA Increased mutant human huntingtin aggregation 1.5 - 2   19789644
Muscle morphogenesis and function (1) skpA Lethal np   20220848
Muscle morphogenesis and function (1) skpA Lethal np   20220848
Muscle morphogenesis and function (1) skpA Lethal np   20220848
Muscle morphogenesis and function (3) skpA Clumpy Z-line (irregular aggregates) np   20220848
Heat nociception (1) skpA Developmentally lethal 0   21074052
Heat nociception (1) skpA Developmentally lethal 1.57   21074052
Heart development and function (1) skpA none 0.83   20371351
Heart development and function (1) skpA none 1   20371351
Heart development and function (2) skpA Decreased viability 3.6   20371351
Serratia marcescens infection (1) skpA none -1.04901960784313   19520911
Notch pathway regulation (4) skpA Completely lethal (before pupal) sp   19363474
Notch pathway regulation (4) skpA Completely lethal (before pupal) sp   19363474
Notch pathway regulation (4) skpA Completely lethal (pupal) sp   19363474
G2-M DNA damage checkpoint regulation (2) skpA Increased histone H3 phosphorylation with doxorubicin 38.89 with doxorubicin 21205937
G2-M DNA damage checkpoint regulation (2) skpA Increased histone H3 phosphorylation with etoposide 58.96 with etoposide 21205937
G2-M DNA damage checkpoint regulation (2) skpA Increased histone H3 phosphorylation after X-ray exposure 35.07 X-ray exposure 21205937
G2-M DNA damage checkpoint regulation (2) skpA Increased histone H3 phosphorylation with bleocin 14.88 with bleocin 21205937
Self-renewal and differentiation in neural stem cells skpA GFP aggregates number, GFP aggregates size, lethal sp   21549331
Self-renewal and differentiation in neural stem cells skpA GFP aggregates number, GFP aggregates size, neuroblast cell shape, ganglion mother cell shorter lineages, neuroblast underproliferation, lethal sp   21549331

0 Submissions