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Gene : RpL40 D. melanogaster

DB identifier  ? FBgn0003941 Secondary Identifier  ? CG2960
Name  ? Ribosomal protein L40 Source  FlyBase
  • synonyms:
  • Ubi-f52,
  • FBgn0061410,
  • CG2960,
  • CEP52,
  • Ub52,
  • Ubiq,
  • Rpl40,
  • Ubiquitin fusion 52,
  • ubiquitin 52-AA extension protein,
  • DUb52,
  • Ubiquitin,
  • Ubi-f,
  • BcDNA:RE10554,
  • FBgn0003941,
  • FBan0002960

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8 Alleles

DB identifier Symbol Allele Class Organism
FBal0286446 RpL40[Scer\UAS.ORF]   Drosophila melanogaster
FBal0286447 RpL40[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0213254 RpL40[GD9867]   Drosophila melanogaster
FBal0262805 RpL40[GL00339]   Drosophila melanogaster
FBal0234972 RpL40[KK107503]   Drosophila melanogaster
FBal0279845 RpL40[TrojanHorse]   Drosophila melanogaster
FBal0279846 RpL40[TrojanHorseDelta]   Drosophila melanogaster
FBal0273242 RpL40[NIG.2960R]   Drosophila melanogaster

249 Clones

Secondary Identifier DB identifier
FGH126H08 FBcl0388516
ESG0116c.B21_B04 FBcl0002521
Nfly-102 FBcl0006347
EK133617 FBcl0038280
bs70a11 FBcl0057563
EC02001 FBcl0072679
EC01411 FBcl0072681
EC27250 FBcl0072683
EC29049 FBcl0072685
EC25489 FBcl0072687
EC38950 FBcl0072689
EC39657 FBcl0072691
EC22146 FBcl0072693
EC36333 FBcl0072697
EC32677 FBcl0072699
EN00640 FBcl0101431
EN05017 FBcl0101449
EN14110 FBcl0101459
EN08516 FBcl0101463
EN05418 FBcl0101465
EN07604 FBcl0101467
EN14636 FBcl0101471
EN04224 FBcl0101473
EN09825 FBcl0101477
EN15139 FBcl0101481
EN16223 FBcl0101485
GH01145 FBcl0133033
GH20529 FBcl0133047
GH27428 FBcl0133053
GH05893 FBcl0133059

4 Exons

DB identifier Symbol
FBgn0003941:1 RpL40:1
FBgn0003941:3 RpL40:3
FBgn0003941:2 RpL40:2
FBgn0003941:4 RpL40:4

2 Transcripts

DB identifier Gene
FBtr0077470 RpL40
FBtr0334787 RpL40

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0077470-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0334787-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0077470-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0334787-3-prime-utr Drosophila melanogaster

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235 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
33629 NCBI Entrez Gene identifiers FBgn0003941
59826 BioGRID FBgn0003941

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 9814.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 11417.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 12944.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 13860.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 11125.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 11918.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 7480.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 13398.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 11342.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 8888.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 9600.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 15745.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 8237.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 12310.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 15817.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 12262.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 10068.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 9155.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 10704.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 9767.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 12949.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 8869.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 7766.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 6461.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 5586.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 9226.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 8676.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 7818.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 8028.0
FBgn0003941 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 9697.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0003941:1_FBgn0003941:3 Drosophila melanogaster
intron_FBgn0003941:2_FBgn0003941:4 Drosophila melanogaster

38 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpL40 Increased lipid droplet area 7.806491847   19067489
Lipid storage RpL40 Increased lipid droplet area 8.697866991   19067489
ERK signaling RpL40 ERK activation reduced weak   17086199
Intracellular Listeria monocytogenes infection RpL40 Increased GFP protein expression moderate   16020693
Hedgehog signaling RpL40 Decreased Hedgehog reporter activity -2.76   16311596
Mycobacterial infection (1) - M. fortuitum infection RpL40 Decreased M. fortuitum intracellular infection 2.8 measurement after 3 days 16020694
Constitutive protein secretion and Golgi organization (1) RpL40 Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) RpL40 Decreased G1 cell size, decreased viability sp   16496002
Cell size and cell-cycle regulation (1) RpL40 Decreased G1 DNA content, increased G2 cell size, decreased viability sp   16496002
Cell size and cell-cycle regulation (2) RpL40 Decreased viability 0.344   16496002
Cell size and cell-cycle regulation (2) RpL40 Decreased viability 0.396   16496002
Cell size and cell-cycle regulation (3) RpL40 Decreased cell number 103   16496002
Cell size and cell-cycle regulation (3) RpL40 Decreased cell number 194   16496002
Cell size and cell-cycle regulation (4) RpL40 none below threshold   16496002
Candida albicans phagocytosis (1) RpL40 none np   16336044
Lipid storage RpL40 More dispersed droplets strong (but ribosomal)   18408709
Combinatorial effect with methyl methanesulphonate (2) RpL40 Synthetic lethal with methyl methanesulphonate sp   19543366
Mutant human huntingtin aggregation RpL40 Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) RpL40 Lethal np   20220848
Muscle morphogenesis and function (1) RpL40 none np   20220848
Muscle morphogenesis and function (3) RpL40 Split myofibril, fading Z-line np   20220848
Heat nociception (1) RpL40 none -1.17   21074052
Heat nociception (1) RpL40 none -1.17   21074052
Heat nociception (1) RpL40 none -1.17   21074052
Heat nociception (1) RpL40 none -1.17   21074052
Heart development and function (1) RpL40 none 0.5   20371351
Serratia marcescens infection (1) RpL40 Decreased viability after Serratia marcescens infection -3.79411764705882   19520911
Serratia marcescens infection (2) RpL40 none sp   19520911
Serratia marcescens infection (4) RpL40 Decreased viability after Serratia marcescens infection sp   19520911
Serratia marcescens infection (5) RpL40 Viable np   19520911

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