modENCODE |  Help |  blog

Gene : yrt D. melanogaster

DB identifier  ? FBgn0004049 Secondary Identifier  ? CG9764
Name  ? yurt Source  FlyBase
  • synonyms:
  • Nbl4,
  • CG9764,
  • l(3)m112,
  • l(3)87Ek,
  • Yrt,
  • FBgn0000466,
  • FBan0009764,
  • m112,
  • Yurt,
  • dlhB,
  • FBgn0004049,
  • lethal(3)87Ek,
  • FBgn0038155,
  • l(3)E19,
  • FBgn0002363,
  • dorsal holes B

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

27 Alleles

DB identifier Symbol Allele Class Organism
FBal0246342 yrt[75]   Drosophila melanogaster
FBal0246343 yrt[65]   Drosophila melanogaster
FBal0216186 yrt[Scer\UAS.cMa]   Drosophila melanogaster
FBal0245840 yrt[JF01600]   Drosophila melanogaster
FBal0146591 yrt[EY01443]   Drosophila melanogaster
FBal0177087 yrt[e01024]   Drosophila melanogaster
FBal0286013 yrt[MI08245]   Drosophila melanogaster
FBal0010546 yrt[87Ek-10]   Drosophila melanogaster
FBal0010542 yrt[87Ek-6]   Drosophila melanogaster
FBal0010540 yrt[87Ek-4]   Drosophila melanogaster
FBal0010538 yrt[87Ek-2]   Drosophila melanogaster
FBal0010539 yrt[87Ek-3]   Drosophila melanogaster
FBal0010544 yrt[87Ek-8]   Drosophila melanogaster
FBal0010543 yrt[87Ek-7]   Drosophila melanogaster
FBal0018819 yrt[2]   Drosophila melanogaster
FBal0010541 yrt[87Ek-5]   Drosophila melanogaster
FBal0010545 yrt[87Ek-9]   Drosophila melanogaster
FBal0010537 yrt[87Ek-1]   Drosophila melanogaster
FBal0018818 yrt[1]   Drosophila melanogaster
FBal0010547 yrt[87Ek-11]   Drosophila melanogaster
FBal0086262 yrt[unspecified]   Drosophila melanogaster
FBal0018820 yrt[3]   Drosophila melanogaster
FBal0263436 yrt[HMS01532]   Drosophila melanogaster
FBal0246140 yrt[75a]   Drosophila melanogaster
FBal0210929 yrt[GD13224]   Drosophila melanogaster
FBal0231404 yrt[KK101638]   Drosophila melanogaster
FBal0247706 yrt[JF03429]   Drosophila melanogaster

82 Clones

Secondary Identifier DB identifier
EK256448 FBcl0021582
EK165212 FBcl0021604
EK223235 FBcl0021624
EK205142 FBcl0021644
EK269004 FBcl0021662
EK012028 FBcl0021672
EK273302 FBcl0021684
EK176345 FBcl0021694
EK218538 FBcl0021712
EK138907 FBcl0021722
EK067511 FBcl0021732
EC43794 FBcl0073241
EC26994 FBcl0073243
EN04134 FBcl0101963
GH28412 FBcl0134227
GM09886 FBcl0143689
GM09873 FBcl0143690
GM19755 FBcl0148402
LD11749 FBcl0162147
LD01167 FBcl0162205
LD04526 FBcl0162243
LD11531 FBcl0162249
LD13270 FBcl0162262
LD09035 FBcl0162267
LD24419 FBcl0177323
LD37260 FBcl0177699
LD43624 FBcl0177712
LD35542 FBcl0177809
LD33734 FBcl0177856
LD35931 FBcl0177924

11 Exons

DB identifier Symbol
FBgn0004049:11 yrt:11
FBgn0004049:10 yrt:10
FBgn0004049:9 yrt:9
FBgn0004049:8 yrt:8
FBgn0004049:7 yrt:7
FBgn0004049:6 yrt:6
FBgn0004049:5 yrt:5
FBgn0004049:4 yrt:4
FBgn0004049:3 yrt:3
FBgn0004049:1 yrt:1
FBgn0004049:2 yrt:2

4 Transcripts

DB identifier Gene
FBtr0114374 yrt
FBtr0114375 yrt
FBtr0114376 yrt
FBtr0082793 yrt

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0082793-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0114374-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0114375-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0114376-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0082793-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0114374-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0114375-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0114376-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
41656 NCBI Entrez Gene identifiers FBgn0004049
66738 BioGRID FBgn0004049

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 515.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 471.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 592.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 420.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 503.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 432.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 763.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 691.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 540.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 977.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 923.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 498.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 651.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1203.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1122.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 559.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 883.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 906.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 571.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 488.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 567.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 411.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 541.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 700.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 910.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 3409.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 2896.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 2190.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1869.0
FBgn0004049 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1372.0

13 Introns

DB identifier
Organism . Name
intron_FBgn0004049:11_FBgn0004049:10 Drosophila melanogaster
intron_FBgn0004049:10_FBgn0004049:9 Drosophila melanogaster
intron_FBgn0004049:9_FBgn0004049:8 Drosophila melanogaster
intron_FBgn0004049:8_FBgn0004049:7 Drosophila melanogaster
intron_FBgn0004049:7_FBgn0004049:6 Drosophila melanogaster
intron_FBgn0004049:6_FBgn0004049:5 Drosophila melanogaster
intron_FBgn0004049:5_FBgn0004049:4 Drosophila melanogaster
intron_FBgn0004049:4_FBgn0004049:3 Drosophila melanogaster
intron_FBgn0004049:3_FBgn0004049:1 Drosophila melanogaster
intron_FBgn0004049:7_FBgn0004049:5 Drosophila melanogaster
intron_FBgn0004049:4_FBgn0004049:1 Drosophila melanogaster
intron_FBgn0004049:4_FBgn0004049:2 Drosophila melanogaster
intron_FBgn0004049:2_FBgn0004049:1 Drosophila melanogaster

12 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage yrt none 2.25554797   19067489
Lipid storage yrt none -0.016367853   19067489
Cell size and cell-cycle regulation (1) yrt none sp   16496002
Heart development and function yrt Dorsal closure defects, heart patterning defects np   14684833
Muscle morphogenesis and function (1) yrt Flightless np   20220848
Muscle morphogenesis and function (4) yrt Frayed myofibrils np   20220848
Heat nociception (1) yrt none -0.8   21074052
Heart development and function (1) yrt none 1   20371351
Serratia marcescens infection (1) yrt none 0.378048780487804   19520911
Notch pathway regulation (4) yrt none 0   19363474
Adiposity regulation (1) yrt none -0.2   20074523
Hippo pathway regulation yrt none -0.74   23263283

0 Submissions