modENCODE |  Help |  blog

Gene : RpS5a D. melanogaster

DB identifier  ? FBgn0002590 Secondary Identifier  ? CG8922
Name  ? Ribosomal protein S5a Source  FlyBase
  • synonyms:
  • FBgn0002590,
  • FBan0008922,
  • Minute 1(o),
  • Ribosomal protein S5,
  • M(1)o,
  • Minute(1)15D,
  • RpS5,
  • ribosomal protein S5 gene,
  • M(1)34i28,
  • M[[o]],
  • RS5A_DROME,
  • ribosomal protein S5a,
  • S5a,
  • CG8922,
  • Rp S5a,
  • RS5,
  • transcript e,
  • M(1)15D

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

15 Alleles

DB identifier Symbol Allele Class Organism
FBal0281205 RpS5a[GL01502]   Drosophila melanogaster
FBal0284507 RpS5a[Scer\UAS.T:Avic\GFP]   Drosophila melanogaster
FBal0152244 RpS5a[BG02071]   Drosophila melanogaster
FBal0011878 RpS5a[1]   Drosophila melanogaster
FBal0147535 RpS5a[dsRNA.cLa]   Drosophila melanogaster
FBal0052190 RpS5a[R28ts]   Drosophila melanogaster
FBal0048855 RpS5a[unspecified]   Drosophila melanogaster
FBal0011879 RpS5a[2]   Drosophila melanogaster
FBal0220075 RpS5a[G11272]   Drosophila melanogaster
FBal0287419 RpS5a[Scer\UAS.ORF]   Drosophila melanogaster
FBal0287420 RpS5a[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0208392 RpS5a[GD14071]   Drosophila melanogaster
FBal0214760 RpS5a[GD17542]   Drosophila melanogaster
FBal0236187 RpS5a[KK109271]   Drosophila melanogaster
FBal0276210 RpS5a[NIG.8922R]   Drosophila melanogaster

366 Clones

Secondary Identifier DB identifier
DPiM_GM13047 FBcl0741612
UUGC0945 FBcl0005187
UUGC0557 FBcl0006523
AT10983 FBcl0024649
EC41083 FBcl0067929
EC37783 FBcl0067931
EC14775 FBcl0067935
EC33739 FBcl0067941
EC39728 FBcl0067945
EC31712 FBcl0067949
EC32676 FBcl0068135
EC25383 FBcl0068151
EC40528 FBcl0068241
EC39820 FBcl0068811
EN17509 FBcl0096739
EN16622 FBcl0096743
EN12703 FBcl0096775
EN16842 FBcl0096787
EN07312 FBcl0096895
EN03430 FBcl0096913
EN07404 FBcl0096937
EN13936 FBcl0096939
EN17511 FBcl0096995
GH28306 FBcl0102333
GH16044 FBcl0102367
GH08939 FBcl0102379
GH23312 FBcl0102383
GH10577 FBcl0102387
GH03880 FBcl0102395
GH14732 FBcl0102555

7 Exons

DB identifier Symbol
FBgn0002590:7 RpS5a:7
FBgn0002590:4 RpS5a:4
FBgn0002590:3 RpS5a:3
FBgn0002590:2 RpS5a:2
FBgn0002590:1 RpS5a:1
FBgn0002590:6 RpS5a:6
FBgn0002590:5 RpS5a:5

3 Transcripts

DB identifier Gene
FBtr0074406 RpS5a
FBtr0343292 RpS5a
FBtr0343293 RpS5a

6 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0074406-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0343292-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0343293-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0074406-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0343292-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0343293-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

52 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
32700 NCBI Entrez Gene identifiers FBgn0002590
59029 BioGRID FBgn0002590

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 17993.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 18299.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 22577.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 28610.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 18740.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 25146.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 14018.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 24474.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 22024.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 15038.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 17344.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 21925.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 20070.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 16592.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 28537.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 22449.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 17845.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 16279.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 24489.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 15079.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 18613.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 11815.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 12211.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 10992.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 8661.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 8529.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 8261.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 8501.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 9347.0
FBgn0002590 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 11334.0

6 Introns

DB identifier
Organism . Name
intron_FBgn0002590:7_FBgn0002590:4 Drosophila melanogaster
intron_FBgn0002590:4_FBgn0002590:3 Drosophila melanogaster
intron_FBgn0002590:3_FBgn0002590:2 Drosophila melanogaster
intron_FBgn0002590:2_FBgn0002590:1 Drosophila melanogaster
intron_FBgn0002590:6_FBgn0002590:4 Drosophila melanogaster
intron_FBgn0002590:5_FBgn0002590:4 Drosophila melanogaster

30 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpS5a Increased lipid droplet area 2.420013115   19067489
Lipid storage RpS5a Increased lipid droplet area 2.714912317   19067489
Hedgehog signaling RpS5a Decreased Hedgehog reporter activity np   12663920
Intracellular Listeria monocytogenes infection RpS5a Increased GFP protein expression moderate   16020693
Hedgehog signaling RpS5a Decreased Hedgehog reporter activity -4.49   16311596
Constitutive protein secretion and Golgi organization (1) RpS5a Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) RpS5a none sp   16496002
Influenza replication RpS5a Decreased Influenza replication -2.06/-3.53   18615016
Lipid storage RpS5a More dispersed droplets strong (but ribosomal)   18408709
Muscle morphogenesis and function (1) RpS5a Lethal np   20220848
Muscle morphogenesis and function (1) RpS5a Lethal np   20220848
Muscle morphogenesis and function (2) RpS5a Wing posture / locomotion / ability to fly defect or lethal / semi-lethal np   20220848
Muscle morphogenesis and function (3) RpS5a Fading Z-line np   20220848
Heat nociception (1) RpS5a none -1.17   21074052
Regulated secretory pathway biogenesis (1) RpS5a none 0.2   21149569
Heart development and function (1) RpS5a Larval lethal 0   20371351
Serratia marcescens infection (1) RpS5a Decreased viability after Serratia marcescens infection -4.0327868852459   19520911
Serratia marcescens infection (2) RpS5a none sp   19520911
Serratia marcescens infection (6) RpS5a Larval lethality or failure to eclose np   19520911
Notch pathway regulation (4) RpS5a Completely lethal (before pupal) sp   19363474
Notch pathway regulation (4) RpS5a Completely lethal (before pupal) sp   19363474
PGN-induced dJNK phosphorylation RpS5a Increased P-JNK protein expression with PGN 2.23 60 min PGN induction 19893628
Hh pathway regulation RpS5a none -0.171057901357231   17903264
Adiposity regulation (1) RpS5a none -0.306   20074523
RTK-Ras-ERK pathway regulation (1) RpS5a none 0.18 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) RpS5a Decreased ERK phosphorylation after EGF stimulation -2.18 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpS5a Increased ERK phosphorylation after sSpitz and EGF stimulation 1.64 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpS5a Increased ERK phosphorylation after sSpitz and EGF stimulation 3.41 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation RpS5a none -2.67   23263283
Glycosylation regulation (1) RpS5a Decreased Chp protein expression np   21203496

0 Submissions