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Gene : rut D. melanogaster

DB identifier  ? FBgn0003301 Secondary Identifier  ? CG9533
Name  ? rutabaga Source  FlyBase
  • synonyms:
  • Rut-AC,
  • rutabage,
  • FBgn0003301,
  • RUTABAGA,
  • FBgn0044471,
  • EP1603,
  • CG9533,
  • AC,
  • FBan0009533,
  • unnamed,
  • RUT,
  • Ac12F

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34 Alleles

DB identifier Symbol Allele Class Organism
FBal0220725 rut[JF02361]   Drosophila melanogaster
FBal0284279 rut[Scer\UAS.cHa]   Drosophila melanogaster
FBal0178143 rut[f06414]   Drosophila melanogaster
FBal0088663 rut[743]   Drosophila melanogaster
FBal0032623 rut[1084]   Drosophila melanogaster
FBal0032624 rut[178]   Drosophila melanogaster
FBal0059947 rut[mb105]   Drosophila melanogaster
FBal0032625 rut[2080]   Drosophila melanogaster
FBal0032628 rut[MB1951]   Drosophila melanogaster
FBal0032630 rut[MB2769]   Drosophila melanogaster
FBal0032631 rut[MB769]   Drosophila melanogaster
FBal0056217 rut[4453]   Drosophila melanogaster
FBal0056214 rut[5399]   Drosophila melanogaster
FBal0056215 rut[5249]   Drosophila melanogaster
FBal0056216 rut[5124]   Drosophila melanogaster
FBal0151570 rut[BG02747]   Drosophila melanogaster
FBal0059946 rut[mb1096]   Drosophila melanogaster
FBal0151567 rut[EP399]   Drosophila melanogaster
FBal0151569 rut[EP1381]   Drosophila melanogaster
FBal0151568 rut[EP1579]   Drosophila melanogaster
FBal0123262 rut[EP1603]   Drosophila melanogaster
FBal0154666 rut[BG00139]   Drosophila melanogaster
FBal0051198 rut[PS511]   Drosophila melanogaster
FBal0014880 rut[3] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0014879 rut[2] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0046387 rut[unspecified]   Drosophila melanogaster
FBal0051199 rut[P363]   Drosophila melanogaster
FBal0014878 rut[1] loss of function allele Drosophila melanogaster
FBal0117384 rut[Scer\UAS.cZa]   Drosophila melanogaster
FBal0210498 rut[GD3358]   Drosophila melanogaster

89 Clones

Secondary Identifier DB identifier
EC03305 FBcl0065631
EP09422 FBcl0076223
EP11338 FBcl0077141
EN04508 FBcl0090235
EN08131 FBcl0090237
EN03733 FBcl0090465
EN04522 FBcl0090467
EN16050 FBcl0090471
EN07328 FBcl0093281
EN14343 FBcl0101205
EN16122 FBcl0101207
EN01510 FBcl0101211
EN12432 FBcl0101213
EN03034 FBcl0101215
EN14739 FBcl0101289
EN07357 FBcl0101291
EK290101 FBcl0101664
EK274549 FBcl0101692
EK135948 FBcl0102746
GH05506 FBcl0104233
EK293060 FBcl0107950
EK187125 FBcl0109810
EK278317 FBcl0109818
EK198832 FBcl0124984
EK209110 FBcl0125108
EK185535 FBcl0132334
EK248634 FBcl0132340
EK156315 FBcl0132402
EK287824 FBcl0132432
EK214607 FBcl0132436

22 Exons

DB identifier Symbol
FBgn0003301:22 rut:22
FBgn0003301:20 rut:20
FBgn0003301:18 rut:18
FBgn0003301:17 rut:17
FBgn0003301:16 rut:16
FBgn0003301:15 rut:15
FBgn0003301:14 rut:14
FBgn0003301:12 rut:12
FBgn0003301:11 rut:11
FBgn0003301:10 rut:10
FBgn0003301:9 rut:9
FBgn0003301:8 rut:8
FBgn0003301:7 rut:7
FBgn0003301:5 rut:5
FBgn0003301:4 rut:4
FBgn0003301:2 rut:2
FBgn0003301:1 rut:1
FBgn0003301:13 rut:13
FBgn0003301:6 rut:6
FBgn0003301:3 rut:3
FBgn0003301:19 rut:19
FBgn0003301:21 rut:21

7 Transcripts

DB identifier Gene
FBtr0073992 rut
FBtr0333654 rut
FBtr0333655 rut
FBtr0333656 rut
FBtr0333657 rut
FBtr0340467 rut
FBtr0305581 rut

14 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0073992-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0340467-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0305581-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333654-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333655-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333656-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333657-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0073992-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0340467-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0305581-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333654-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333655-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333656-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333657-3-prime-utr Drosophila melanogaster

Interactions

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Other

52 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
32406 NCBI Entrez Gene identifiers FBgn0003301
58765 BioGRID FBgn0003301

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 433.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 308.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 223.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 165.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 230.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 368.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 210.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1233.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 508.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 98.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 409.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 182.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 209.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 377.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 588.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 282.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 395.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 111.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 328.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 286.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1041.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 437.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 361.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 248.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 209.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 211.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 140.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 205.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 227.0
FBgn0003301 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 217.0

26 Introns

DB identifier
Organism . Name
intron_FBgn0003301:22_FBgn0003301:20 Drosophila melanogaster
intron_FBgn0003301:20_FBgn0003301:18 Drosophila melanogaster
intron_FBgn0003301:18_FBgn0003301:17 Drosophila melanogaster
intron_FBgn0003301:17_FBgn0003301:16 Drosophila melanogaster
intron_FBgn0003301:16_FBgn0003301:15 Drosophila melanogaster
intron_FBgn0003301:15_FBgn0003301:14 Drosophila melanogaster
intron_FBgn0003301:14_FBgn0003301:13 Drosophila melanogaster
intron_FBgn0003301:13_FBgn0003301:12 Drosophila melanogaster
intron_FBgn0003301:12_FBgn0003301:11 Drosophila melanogaster
intron_FBgn0003301:11_FBgn0003301:10 Drosophila melanogaster
intron_FBgn0003301:10_FBgn0003301:9 Drosophila melanogaster
intron_FBgn0003301:9_FBgn0003301:8 Drosophila melanogaster
intron_FBgn0003301:8_FBgn0003301:7 Drosophila melanogaster
intron_FBgn0003301:7_FBgn0003301:5 Drosophila melanogaster
intron_FBgn0003301:5_FBgn0003301:4 Drosophila melanogaster
intron_FBgn0003301:4_FBgn0003301:2 Drosophila melanogaster
intron_FBgn0003301:2_FBgn0003301:1 Drosophila melanogaster
intron_FBgn0003301:14_FBgn0003301:12 Drosophila melanogaster
intron_FBgn0003301:5_FBgn0003301:3 Drosophila melanogaster
intron_FBgn0003301:3_FBgn0003301:2 Drosophila melanogaster
intron_FBgn0003301:19_FBgn0003301:18 Drosophila melanogaster
intron_FBgn0003301:21_FBgn0003301:20 Drosophila melanogaster
intron_FBgn0003301:7_FBgn0003301:6 Drosophila melanogaster
intron_FBgn0003301:6_FBgn0003301:2 Drosophila melanogaster
intron_FBgn0003301:5_FBgn0003301:2 Drosophila melanogaster
intron_FBgn0003301:6_FBgn0003301:4 Drosophila melanogaster

22 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage rut none -0.210358397   19067489
Lipid storage rut none -0.632740472   19067489
Lipid storage rut none -2.133396183   19067489
Hedgehog signaling rut Decreased Hedgehog reporter activity -2.55   16311596
Cell size and cell-cycle regulation (1) rut none sp   16496002
Combinatorial effect with methyl methanesulphonate (1) rut none sp   19543366
Combinatorial effect with methyl methanesulphonate (2) rut none sp   19543366
Muscle morphogenesis and function (1) rut none np   20220848
Heat nociception (1) rut none -1.17   21074052
Heart development and function (1) rut none 1   20371351
Serratia marcescens infection (1) rut none 0.242424242424242   19520911
Notch pathway regulation (4) rut none 0   19363474
PGN-induced dJNK phosphorylation rut Increased P-JNK protein expression with PGN 2.58 15 min PGN induction 19893628
Hh pathway regulation rut Downregulation of Hh pathway -0.286206709940775   17903264
Hh pathway regulation rut none 0.0216472436634085   17903264
Adiposity regulation (1) rut none 0.258   20074523
Blood cell homeostasis regulation (1) rut none np   20540764
Blood cell homeostasis regulation (2) rut none np   20540764
RTK-Ras-ERK pathway regulation (2) rut none 0.89 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) rut Increased ERK phosphorylation after sSpitz and EGF stimulation 2.98 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation rut none 0.19   23263283
Glycosylation regulation (1) rut none sp   21203496

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