modENCODE |  Help |  blog

Gene : RpL4 D. melanogaster

DB identifier  ? FBgn0003279 Secondary Identifier  ? CG5502
Name  ? Ribosomal protein L4 Source  FlyBase
  • synonyms:
  • CG5502,
  • Ribosomal protein L1,
  • RpL1,
  • FBgn0046357,
  • Rp L4,
  • FBgn0003279,
  • FBan0005502,
  • anon-WO0172774.76

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

6 Alleles

DB identifier Symbol Allele Class Organism
FBal0287030 RpL4[Scer\UAS.ORF]   Drosophila melanogaster
FBal0287031 RpL4[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0208357 RpL4[GD11675]   Drosophila melanogaster
FBal0222109 RpL4[NP0086]   Drosophila melanogaster
FBal0235576 RpL4[KK108442]   Drosophila melanogaster
FBal0274709 RpL4[NIG.5502R]   Drosophila melanogaster

1088 Clones

Secondary Identifier DB identifier
RE07825 FBcl0324061
RE23892 FBcl0324079
GM15138 FBcl0324085
AT13048 FBcl0033717
AT31553 FBcl0033743
AT26292 FBcl0033747
UUGC0006 FBcl0001057
ESG0111a.B21_C07 FBcl0001372
ESG0116d.B21_B07 FBcl0002491
ESG0116d.B21_D04 FBcl0002497
ESG013d.E21_B10 FBcl0010389
ESG012a.E21_H09 FBcl0011893
ESG013c.E21_H01 FBcl0011909
ESG0120a.B21_B04 FBcl0013289
ESG0119c.B21_H06 FBcl0013397
AT26426 FBcl0033285
AT07614 FBcl0033623
bs45h11 FBcl0046561
bs66b08 FBcl0054951
EN16045 FBcl0099229
EN17420 FBcl0099235
EN08256 FBcl0099243
EN11107 FBcl0099245
EN06230 FBcl0099247
EN12057 FBcl0099251
EN03544 FBcl0099253
EN02052 FBcl0099255
EN01313 FBcl0099261
GH22854 FBcl0116345
GH03125 FBcl0116361

4 Exons

DB identifier Symbol
FBgn0003279:4 RpL4:4
FBgn0003279:1 RpL4:1
FBgn0003279:2 RpL4:2
FBgn0003279:3 RpL4:3

1 Transcripts

DB identifier Gene
FBtr0085248 RpL4

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0085248-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0085248-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

49 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
43349 NCBI Entrez Gene identifiers FBgn0003279
68230 BioGRID FBgn0003279

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 12548.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 12986.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 14880.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 16075.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 14384.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 15888.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 10652.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 19283.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 16549.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 11955.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 13201.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 15390.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 12295.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 16145.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 21809.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 15193.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 14099.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 11911.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 18996.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 9562.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 14745.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 10041.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 7907.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 6945.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 5817.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 13933.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 12975.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 11712.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 8925.0
FBgn0003279 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 11577.0

3 Introns

DB identifier
Organism . Name
intron_FBgn0003279:1_FBgn0003279:2 Drosophila melanogaster
intron_FBgn0003279:2_FBgn0003279:3 Drosophila melanogaster
intron_FBgn0003279:3_FBgn0003279:4 Drosophila melanogaster

27 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpL4 Increased lipid droplet area 3.123975622   19067489
Lipid storage RpL4 Increased lipid droplet area 4.976725843   19067489
Drosophila C virus infection RpL4 Drosophila C virus replication down np   17040126
Cytokinesis regulation RpL4 Binucleate cells with decreased viability weak   15547975
Drosophila C virus infection RpL4 Drosophila C virus infection reduced np   15713840
Hedgehog signaling RpL4 Decreased Hedgehog reporter activity -2.14   16311596
Constitutive protein secretion and Golgi organization (1) RpL4 Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) RpL4 Increased G1 DNA content, decreased G2 DNA content, decreased viability, decreased cytokinesis sp   16496002
Cell size and cell-cycle regulation (2) RpL4 Decreased viability 0.886   16496002
Cell size and cell-cycle regulation (3) RpL4 Decreased cell number 399   16496002
Cell size and cell-cycle regulation (4) RpL4 none below threshold   16496002
Candida albicans phagocytosis (1) RpL4 none np   16336044
Lipid storage RpL4 More dispersed droplets strong (but ribosomal)   18408709
Combinatorial effect with methyl methanesulphonate (2) RpL4 Synthetic lethal with methyl methanesulphonate sp   19543366
Heat nociception (1) RpL4 Developmentally lethal 0   21074052
Heart development and function (1) RpL4 Larval lethal 0.25   20371351
PGN-induced dJNK phosphorylation RpL4 Increased P-JNK protein expression with PGN 2.99 15 min PGN induction 19893628
PGN-induced dJNK phosphorylation RpL4 Increased P-JNK protein expression with PGN 1.98 60 min PGN induction 19893628
Muscle assembly and maintenance RpL4 Muscles with short and/or thin myofibrils severe   18359903
Hh pathway regulation RpL4 Downregulation of Hh pathway -0.608669928114641   17903264
Hh pathway regulation RpL4 Downregulation of Hh pathway -0.518787629221086   17903264
RTK-Ras-ERK pathway regulation (1) RpL4 Decreased ERK phosphorylation after EGF stimulation -5.05 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) RpL4 none -1.39 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpL4 none 1.11 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpL4 Increased ERK phosphorylation after sSpitz and EGF stimulation 3.05 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation RpL4 none -1.43   23263283
Glycosylation regulation (1) RpL4 none sp   21203496

0 Submissions