modENCODE |  Help |  blog

Gene : ush D. melanogaster

DB identifier  ? FBgn0003963 Secondary Identifier  ? CG2762
Name  ? u-shaped Source  FlyBase
  • synonyms:
  • ushaped,
  • dFOG,
  • FBgn0003963,
  • FBan0002762,
  • ZFPM2,
  • Drosophila Friend of GATA,
  • l(2)19,
  • U-shaped,
  • Ush,
  • u-sh,
  • FOG,
  • CG2762,
  • Friend of GATA

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

70 Alleles

DB identifier Symbol Allele Class Organism
FBal0243243 ush[VDRC.cUa]   Drosophila melanogaster
FBal0242112 ush[HM05193]   Drosophila melanogaster
FBal0243661 ush[EX1] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243662 ush[E2] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0243663 ush[E4] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243664 ush[E5] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243665 ush[E9] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243666 ush[E14] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243667 ush[VE20] amorphic allele - genetic evidence Drosophila melanogaster
FBal0243668 ush[VE25] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0243669 ush[VE26] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0243670 ush[VE27] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0243671 ush[VE29] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0243672 ush[VE30] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0257427 ush[HMS00744]   Drosophila melanogaster
FBal0280614 ush[Scer\UAS.cSa]   Drosophila melanogaster
FBal0280615 ush[4A.Scer\UAS]   Drosophila melanogaster
FBal0192279 ush[MB02155]   Drosophila melanogaster
FBal0158534 ush[f06555]   Drosophila melanogaster
FBal0082106 ush[1513] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0119095 ush[MD751]   Drosophila melanogaster
FBal0280701 ush[MI06700]   Drosophila melanogaster
FBal0082104 ush[SW42]   Drosophila melanogaster
FBal0101120 ush[Q41] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0082094 ush[tCa]   Drosophila melanogaster
FBal0082097 ush[hs.PC]   Drosophila melanogaster
FBal0017648 ush[1] amorphic allele - genetic evidence Drosophila melanogaster
FBal0098623 ush[XW88]   Drosophila melanogaster
FBal0017649 ush[2] loss of function allele, amorphic allele - genetic evidence, hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0117269 ush[fl.cFa]   Drosophila melanogaster

35 Clones

Secondary Identifier DB identifier
EK291320 FBcl0068800
EK181439 FBcl0068914
EK131917 FBcl0069024
EK195032 FBcl0070716
EK284901 FBcl0070822
EK175418 FBcl0071110
EK183224 FBcl0071262
EK276311 FBcl0071348
EK193411 FBcl0071366
EK144717 FBcl0071384
EK253612 FBcl0071402
EK169050 FBcl0071418
EK228623 FBcl0071436
EK117950 FBcl0071456
EK131539 FBcl0071530
EK290615 FBcl0071668
EP03514 FBcl0074315
EN00843 FBcl0090823
EN04324 FBcl0090835
EN03123 FBcl0090879
EN05933 FBcl0090883
LD12631 FBcl0156123
RE06460 FBcl0212300
RE48415 FBcl0212311
RE10333 FBcl0212344
RH72779 FBcl0254471
SD18689 FBcl0275829
SD10668 FBcl0275900
SD07684 FBcl0275918
SD22782 FBcl0275928

13 Exons

DB identifier Symbol
FBgn0003963:5 ush:5
FBgn0003963:6 ush:6
FBgn0003963:7 ush:7
FBgn0003963:8 ush:8
FBgn0003963:9 ush:9
FBgn0003963:10 ush:10
FBgn0003963:11 ush:11
FBgn0003963:13 ush:13
FBgn0003963:3 ush:3
FBgn0003963:12 ush:12
FBgn0003963:4 ush:4
FBgn0003963:1 ush:1
FBgn0003963:2 ush:2

5 Transcripts

DB identifier Gene
FBtr0329895 ush
FBtr0310027 ush
FBtr0333012 ush
FBtr0333013 ush
FBtr0078063 ush

10 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0078063-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0310027-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0329895-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333012-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333013-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0078063-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0310027-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0329895-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333012-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333013-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
33225 NCBI Entrez Gene identifiers FBgn0003963
59481 BioGRID FBgn0003963

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 2084.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 2216.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1784.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 3203.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 4331.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 2224.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 4843.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 4829.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 5016.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1375.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 2361.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 2632.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 2775.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 4852.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 3184.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 2911.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 3430.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1050.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1620.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 2454.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 3179.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1673.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 2328.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 2829.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 2099.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 370.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 973.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 3253.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1030.0
FBgn0003963 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1334.0

13 Introns

DB identifier
Organism . Name
intron_FBgn0003963:1_FBgn0003963:2 Drosophila melanogaster
intron_FBgn0003963:2_FBgn0003963:6 Drosophila melanogaster
intron_FBgn0003963:6_FBgn0003963:7 Drosophila melanogaster
intron_FBgn0003963:7_FBgn0003963:8 Drosophila melanogaster
intron_FBgn0003963:8_FBgn0003963:9 Drosophila melanogaster
intron_FBgn0003963:9_FBgn0003963:10 Drosophila melanogaster
intron_FBgn0003963:10_FBgn0003963:11 Drosophila melanogaster
intron_FBgn0003963:11_FBgn0003963:12 Drosophila melanogaster
intron_FBgn0003963:3_FBgn0003963:6 Drosophila melanogaster
intron_FBgn0003963:5_FBgn0003963:6 Drosophila melanogaster
intron_FBgn0003963:11_FBgn0003963:13 Drosophila melanogaster
intron_FBgn0003963:4_FBgn0003963:6 Drosophila melanogaster
intron_FBgn0003963:1_FBgn0003963:6 Drosophila melanogaster

31 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage ush none -1.049180389   19067489
Lipid storage ush none 2.061791647   19067489
Neural outgrowth ush Short axons np   18604272
ERK signaling ush ERK activation increased weak   17086199
Intracellular Listeria monocytogenes infection ush Decreased GFP protein expression moderate   16020693
Innate immunity ush Decreased IMD/Rel reporter activity -4.8   16170305
Cell size and cell-cycle regulation (1) ush none sp   16496002
Cell size and cell-cycle regulation (1) ush none sp   16496002
Heart development and function ush Heart tube assembly defects, heart patterning defects np   14684833
Dendrite pattern formation ush none np   16547170
Muscle morphogenesis and function (1) ush none np   20220848
Heat nociception (1) ush none -1.17   21074052
Heart development and function (1) ush none 1   20371351
Serratia marcescens infection (1) ush none 1.45977011494252   19520911
Notch pathway regulation (4) ush Completely lethal (pupal) sp   19363474
PGN-induced dJNK phosphorylation ush Decreased P-JNK protein expression with PGN -4.53 15 min PGN induction 19893628
Adiposity regulation (1) ush none -0.567   20074523
Blood cell homeostasis regulation (1) ush Increased melanotic mass formation np   20540764
Blood cell homeostasis regulation (2) ush Increased melanotic mass formation np   20540764
Blood cell homeostasis regulation (3) ush Increased melanotic mass formation 40   20540764
Blood cell homeostasis regulation (4) ush Increased melanotic mass formation 17   20540764
Blood cell homeostasis regulation (5) ush Increased melanotic mass formation 67.7   20540764
Blood cell homeostasis regulation (6) ush Increased melanotic mass formation 37   20540764
Blood cell homeostasis regulation (7) ush Increased melanotic mass formation 48.1   20540764
Blood cell homeostasis regulation (8) ush Increased melanotic mass formation 75.5   20540764
RTK-Ras-ERK pathway regulation (1) ush Increased ERK phosphorylation after EGF stimulation 3.63 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) ush none -0.63 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) ush none 0.08 30 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) ush none -1.5 10 minutes sSpitz stimulation 22028469
Hippo pathway regulation ush none -2.34   23263283

0 Submissions