modENCODE |  Help |  blog

Gene : scrt D. melanogaster

DB identifier  ? FBgn0004880 Secondary Identifier  ? CG1130
Name  ? scratch Source  FlyBase
  • synonyms:
  • clone 1.31,
  • FBgn0066002,
  • anon-WO02059370.57,
  • FBgn0004880,
  • FBan0001130,
  • BcDNA:RH71479,
  • anon-EST:Liang-1.31,
  • clone 1.67,
  • anon-EST:Liang-1.67,
  • FBgn0064785,
  • Scrt,
  • Scratch,
  • CG1130

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

13 Alleles

DB identifier Symbol Allele Class Organism
FBal0220714 scrt[JF02346]   Drosophila melanogaster
FBal0046412 scrt[hs.PR]   Drosophila melanogaster
FBal0046416 scrt[jo17] loss of function allele Drosophila melanogaster
FBal0046415 scrt[jo16] loss of function allele Drosophila melanogaster
FBal0046413 scrt[jo11] amorphic allele - genetic evidence Drosophila melanogaster
FBal0046417 scrt[jo6] loss of function allele Drosophila melanogaster
FBal0046414 scrt[jo14] loss of function allele Drosophila melanogaster
FBal0191618 scrt[11-6]   Drosophila melanogaster
FBal0270815 scrt[NIG.1130R]   Drosophila melanogaster
FBal0210532 scrt[GD4385]   Drosophila melanogaster
FBal0217217 scrt[KG02164]   Drosophila melanogaster
FBal0222196 scrt[NP1338]   Drosophila melanogaster
FBal0238620 scrt[KK113157]   Drosophila melanogaster

66 Clones

Secondary Identifier DB identifier
AI124265 FBcl0000777
EP10726 FBcl0075297
EP18349 FBcl0075301
EP00753 FBcl0075303
EP11632 FBcl0075305
EK209742 FBcl0085214
EK133603 FBcl0085220
EK201526 FBcl0085226
EK020150 FBcl0085260
EK201534 FBcl0085268
EK025938 FBcl0085276
EK145261 FBcl0085282
EK056049 FBcl0085296
EK253949 FBcl0085310
EK204958 FBcl0085346
EK056716 FBcl0085352
EK107605 FBcl0085358
EK186907 FBcl0085376
EK290240 FBcl0085444
GH24324 FBcl0107285
GH24573 FBcl0107287
GH12250 FBcl0107289
LD09869 FBcl0152488
LP01683 FBcl0180946
RE55444 FBcl0197995
RE51541 FBcl0197998
RH71479 FBcl0245002
RH74690 FBcl0245025
RH02885 FBcl0245127
SD19468 FBcl0276977

3 Exons

DB identifier Symbol
FBgn0004880:1 scrt:1
FBgn0004880:2 scrt:2
FBgn0004880:3 scrt:3

2 Transcripts

DB identifier Gene
FBtr0073165 scrt
FBtr0333136 scrt

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0073165-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333136-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0073165-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333136-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
38469 NCBI Entrez Gene identifiers FBgn0004880
63955 BioGRID FBgn0004880

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 25.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 11.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 31.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 21.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 40.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 25.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 24.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 21.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 11.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 19.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 16.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 41.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 6.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 34.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 32.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 21.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 18.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 39.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 27.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 13.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 29.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 19.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 14.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 20.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 19.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 51.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 120.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 685.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 913.0
FBgn0004880 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1280.0

2 Introns

DB identifier
Organism . Name
intron_FBgn0004880:1_FBgn0004880:3 Drosophila melanogaster
intron_FBgn0004880:1_FBgn0004880:2 Drosophila melanogaster

18 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage scrt none 1.873572823   19067489
Lipid storage scrt none 6.399408041   19067489
Lipid storage scrt none -0.266925628   19067489
Lipid storage scrt none -0.681200138   19067489
Constitutive protein secretion and Golgi organization (1) scrt Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) scrt none sp   16496002
Dendrite pattern formation scrt Decreased arborization np   16547170
Combinatorial effect with methyl methanesulphonate (1) scrt Synthetic lethal with methyl methanesulphonate sp   19543366
Combinatorial effect with methyl methanesulphonate (2) scrt Synthetic lethal with methyl methanesulphonate sp   19543366
Mutant human huntingtin aggregation scrt Decreased mutant human huntingtin aggregation <= -2   19789644
Heat nociception (1) scrt none 1.98   21074052
Heart development and function (1) scrt none 1   20371351
Serratia marcescens infection (1) scrt none 0.308823529411764   19520911
Notch pathway regulation (4) scrt Completely lethal (pupal) sp   19363474
Notch pathway regulation (4) scrt Completely lethal (pupal) sp   19363474
PGN-induced dJNK phosphorylation scrt Decreased P-JNK protein expression with PGN -3.12 15 min PGN induction 19893628
Hippo pathway regulation scrt none 0.66   23263283
Glycosylation regulation (1) scrt Lethal np   21203496

0 Submissions