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Gene : Upf3 D. melanogaster

DB identifier  ? FBgn0034923 Secondary Identifier  ? CG11184
Name  ? Upf3 Source  FlyBase
  • synonyms:
  • FBan0011184,
  • FBgn0034923,
  • CG11184,
  • UPF3

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5 Alleles

DB identifier Symbol Allele Class Organism
FBal0265816 Upf3[1]   Drosophila melanogaster
FBal0159558 Upf3[EY03241]   Drosophila melanogaster
FBal0150573 Upf3[dsRNA.cGa]   Drosophila melanogaster
FBal0270774 Upf3[NIG.11184R]   Drosophila melanogaster
FBal0208950 Upf3[GD7228]   Drosophila melanogaster

25 Clones

Secondary Identifier DB identifier
EK295447 FBcl0007720
EK047538 FBcl0007750
AT31845 FBcl0015177
AT18503 FBcl0015277
AT10942 FBcl0015423
LD10688 FBcl0160076
LD10165 FBcl0160430
LD45369 FBcl0175319
LD38238 FBcl0175324
LD43172 FBcl0175824
RH05207 FBcl0266323
RH57958 FBcl0266332
RH06537 FBcl0266431
RH06568 FBcl0266448
RH08650 FBcl0266511
RH17264 FBcl0266689
RH05633 FBcl0267294
RH48807 FBcl0267295
SD14089 FBcl0279915
SD14041 FBcl0279922
SD10857 FBcl0279934
FGH110A06 FBcl0387295
FGM231G10 FBcl0391583
CK01.58C.B4 FBcl0475500
192575 FBcl0475497

4 Exons

DB identifier Symbol
FBgn0034923:4 Upf3:4
FBgn0034923:1 Upf3:1
FBgn0034923:2 Upf3:2
FBgn0034923:3 Upf3:3

2 Transcripts

DB identifier Gene
FBtr0072221 Upf3
FBtr0343302 Upf3

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0072221-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0343302-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0072221-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0343302-3-prime-utr Drosophila melanogaster

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2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
37792 NCBI Entrez Gene identifiers FBgn0034923
63385 BioGRID FBgn0034923

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 351.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 376.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 320.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 345.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 546.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 93.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 341.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 301.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 218.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 690.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 298.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 281.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 322.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 492.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 340.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 207.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 343.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 268.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 282.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 331.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 382.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 337.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 273.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 255.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 194.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 687.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 356.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 324.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 345.0
FBgn0034923 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 286.0

3 Introns

DB identifier
Organism . Name
intron_FBgn0034923:4_FBgn0034923:2 Drosophila melanogaster
intron_FBgn0034923:2_FBgn0034923:1 Drosophila melanogaster
intron_FBgn0034923:3_FBgn0034923:2 Drosophila melanogaster

23 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Upf3 none 0.252861817   19067489
Lipid storage Upf3 none -0.576100108   19067489
Hedgehog signaling Upf3 Increased Hedgehog reporter activity 5.12   16311596
Cell size and cell-cycle regulation (1) Upf3 none sp   16496002
Muscle morphogenesis and function (1) Upf3 none np   20220848
Heat nociception (1) Upf3 none -1.17   21074052
Serratia marcescens infection (1) Upf3 none -0.0166666666666666   19520911
Notch pathway regulation (4) Upf3 none 0   19363474
Notch pathway regulation (4) Upf3 Bristle morphology defects, notum malformation death sp   19363474
Hh pathway regulation Upf3 Downregulation of Hh pathway -0.257144214900664   17903264
Hh pathway regulation Upf3 Downregulation of Hh pathway -0.251956914751494   17903264
Notch pathway regulation (1) Upf3 Downregulation of Notch pathway np   20493818
Notch pathway regulation (2) Upf3 Lethal very strong en-GAL4 20493818
Notch pathway regulation (2) Upf3 Lethal very strong en-GAL4 20493818
Notch pathway regulation (2) Upf3 none np C96-GAL4 20493818
Notch pathway regulation (2) Upf3 Downregulation of Notch pathway; adult wing margin: notches sp C96-GAL4 20493818
Notch pathway regulation (2) Upf3 Upregulation of Notch pathway; wing disc NRE:EGFP: up; wing disc myrRFP: accumulation sp en-GAL4 20493818
Notch pathway regulation (2) Upf3 Upregulation of Notch pathway; wing disc NRE:EGFP: up; wing disc myrRFP: accumulation, reduced sp en-GAL4 20493818
Notch pathway regulation (3) Upf3 Upregulation of Notch pathway np   20493818
Adiposity regulation (1) Upf3 none 0.178   20074523
Hippo pathway regulation Upf3 none 1.13   23263283
Srp/Lz-induced transcriptional activation Upf3 Decreased Srp/Lz-induced transcription -5.56   20368357
Glycosylation regulation (1) Upf3 none sp   21203496

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