modENCODE |  Help |  blog

Gene : RpL13 D. melanogaster

DB identifier  ? FBgn0011272 Secondary Identifier  ? CG4651
Name  ? Ribosomal protein L13 Source  FlyBase
  • synonyms:
  • CG4651,
  • anon-fast-evolving-1D1,
  • FBan0004651,
  • FBgn0014460,
  • r-protein L13,
  • Bbc1,
  • Rpl13,
  • Dmbbc1,
  • CG4651-PA,
  • CG4651-RA,
  • FBgn0025260,
  • anon-EST:fe1D1,
  • L13,
  • unnamed,
  • FBgn0011272,
  • Rp L13

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

7 Alleles

DB identifier Symbol Allele Class Organism
FBal0259593 RpL13[KK108033]   Drosophila melanogaster
FBal0286526 RpL13[Scer\UAS.ORF]   Drosophila melanogaster
FBal0286527 RpL13[Scer\UAS.ORF.T:Ivir\HA1]   Drosophila melanogaster
FBal0214736 RpL13[GD11387]   Drosophila melanogaster
FBal0288057 RpL13[EP-108]   Drosophila melanogaster
FBal0222604 RpL13[e02165]   Drosophila melanogaster
FBal0274305 RpL13[NIG.4651R]   Drosophila melanogaster

771 Clones

Secondary Identifier DB identifier
AA433209 FBcl0331694
Dmel_neb_014296_0447_1531 FBcl0373581
Dmel_neb_013574_0329_1483 FBcl0373582
Dmel_neb_014590_0360_2530 FBcl0373583
Dmel_neb_014592_0856_2901 FBcl0373584
Dmel_dig_001110_0702_2032 FBcl0373585
Dmel_neb_013267_0092_0746 FBcl0373586
Dmel_dig_015642_0697_2625 FBcl0373587
Dmel_neb_014615_0860_3463 FBcl0373588
Dmel_dig_003649_0688_0476 FBcl0373589
Dmel_dig_002863_0633_2792 FBcl0373590
Dmel_dig_003352_0704_0576 FBcl0373591
Dmel_dig_002954_0600_0521 FBcl0373592
Dmel_dig_019354_0632_3410 FBcl0373594
Dmel_neb_011667_0919_1261 FBcl0373593
Dmel_neb_010095_0945_0552 FBcl0373595
Dmel_dig_000406_0643_0336 FBcl0373596
Dmel_dig_010564_0724_0578 FBcl0373599
Dmel_dig_009312_0605_1935 FBcl0373597
Dmel_neb_010964_0085_1704 FBcl0373600
Dmel_neb_012496_0416_3099 FBcl0373601
Dmel_dig_000199_0647_0339 FBcl0373598
Dmel_neb_012757_0659_2682 FBcl0373602
Dmel_neb_011419_0877_1120 FBcl0373603
Dmel_dig_014201_0658_1040 FBcl0373604
Dmel_neb_013206_0650_0832 FBcl0373605
Dmel_neb_004254_0915_3581 FBcl0373606
Dmel_dig_002655_0586_1880 FBcl0373607
Dmel_neb_014616_0620_0778 FBcl0373608
Dmel_dig_000502_0694_3643 FBcl0373609

7 Exons

DB identifier Symbol
FBgn0011272:1 RpL13:1
FBgn0011272:4 RpL13:4
FBgn0011272:5 RpL13:5
FBgn0011272:6 RpL13:6
FBgn0011272:2 RpL13:2
FBgn0011272:3 RpL13:3
FBgn0011272:7 RpL13:7

3 Transcripts

DB identifier Gene
FBtr0079888 RpL13
FBtr0100164 RpL13
FBtr0310482 RpL13

6 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0079888-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0100164-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0310482-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0079888-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0100164-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0310482-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

49 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
34329 NCBI Entrez Gene identifiers FBgn0011272
60423 BioGRID FBgn0011272

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 10701.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 9941.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 14023.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 14170.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 11231.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 16663.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 9171.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 17171.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 15927.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 11819.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 11358.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 12795.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 10962.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 14651.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 17166.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 15360.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 9804.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 12860.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 20502.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 10271.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 13446.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 9354.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 8693.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 6769.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 6606.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 10588.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 10977.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 10368.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 9846.0
FBgn0011272 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 10158.0

6 Introns

DB identifier
Organism . Name
intron_FBgn0011272:1_FBgn0011272:4 Drosophila melanogaster
intron_FBgn0011272:4_FBgn0011272:5 Drosophila melanogaster
intron_FBgn0011272:5_FBgn0011272:6 Drosophila melanogaster
intron_FBgn0011272:3_FBgn0011272:5 Drosophila melanogaster
intron_FBgn0011272:5_FBgn0011272:7 Drosophila melanogaster
intron_FBgn0011272:2_FBgn0011272:4 Drosophila melanogaster

26 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage RpL13 Increased lipid droplet area 4.008611361   19067489
Lipid storage RpL13 Increased lipid droplet area 2.842067658   19067489
Drosophila C virus infection RpL13 Drosophila C virus replication down np   17040126
Intracellular Listeria monocytogenes infection RpL13 Increased GFP protein expression moderate   16020693
L. monocytogenes infection RpL13 Less vacuolar escape *   16157870
Drosophila C virus infection RpL13 Drosophila C virus infection reduced np   15713840
Hedgehog signaling RpL13 Decreased Hedgehog reporter activity -2.15   16311596
Constitutive protein secretion and Golgi organization (1) RpL13 Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) RpL13 Increased G1 DNA content, decreased G2 DNA content, decreased viability sp   16496002
Cell size and cell-cycle regulation (2) RpL13 Decreased viability 0.652   16496002
Cell size and cell-cycle regulation (3) RpL13 none 425   16496002
Candida albicans phagocytosis (1) RpL13 none np   16336044
Influenza replication RpL13 Decreased Influenza replication -0.75/-3.49   18615016
Mitochondrial biogenesis and function RpL13 Increased mitochondrial citrate synthase activity, decreased viability 1.349   18042644
Lipid storage RpL13 More dispersed droplets strong (but ribosomal)   18408709
Combinatorial effect with methyl methanesulphonate (2) RpL13 none sp   19543366
Regulated secretory pathway biogenesis (1) RpL13 none 1.4   21149569
Regulated secretory pathway biogenesis (1) RpL13 none 0.7   21149569
Hh pathway regulation RpL13 Downregulation of Hh pathway -0.294164203833156   17903264
Notch pathway regulation (1) RpL13 Downregulation of Notch pathway np   20493818
RTK-Ras-ERK pathway regulation (1) RpL13 Decreased ERK phosphorylation after EGF stimulation -4.39 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) RpL13 none -1.22 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpL13 Increased ERK phosphorylation after sSpitz and EGF stimulation 1.65 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) RpL13 Increased ERK phosphorylation after sSpitz and EGF stimulation 6.38 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation RpL13 none -1.49   23263283
Glycosylation regulation (1) RpL13 none sp   21203496

0 Submissions