modENCODE |  Help |  blog

Gene : CG5938 D. melanogaster

DB identifier  ? FBgn0046247 Secondary Identifier  ? CG5938
Source  FlyBase
  • synonyms:
  • FBgn0039506,
  • BEST:LD40095,
  • FBan0005938,
  • CG5938,
  • FBgn0046247

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

5 Alleles

DB identifier Symbol Allele Class Organism
FBal0161216 CG5938[c02218]   Drosophila melanogaster
FBal0204884 CG5938[GD8652]   Drosophila melanogaster
FBal0219350 CG5938[DG06203]   Drosophila melanogaster
FBal0235861 CG5938[KK108840]   Drosophila melanogaster
FBal0274904 CG5938[NIG.5938R]   Drosophila melanogaster

124 Clones

Secondary Identifier DB identifier
EK192562 FBcl0019274
EK119904 FBcl0019402
EK076903 FBcl0019504
ESG015b.E21_H06 FBcl0007613
ESG014d.E21_B05 FBcl0009029
ESG013b.E21_H11 FBcl0011365
AT17055 FBcl0035165
AT21089 FBcl0035199
AT25669 FBcl0035203
AT28937 FBcl0035205
AT05820 FBcl0035211
AT12050 FBcl0035231
bs15a11 FBcl0055395
EC25815 FBcl0070339
GH01210 FBcl0135323
LD40095 FBcl0178263
LD43854 FBcl0178264
LP24403 FBcl0191385
RE24117 FBcl0237161
RE55115 FBcl0237297
RE13514 FBcl0237298
RE20074 FBcl0237314
RE24719 FBcl0237319
RE56196 FBcl0237321
RH07366 FBcl0273341
RH73207 FBcl0273344
RH73793 FBcl0273347
RH48054 FBcl0273351
RH18864 FBcl0273368
Dmel_neb_003348_0884_3558 FBcl0370975

8 Exons

DB identifier Symbol
FBgn0046247:2 CG5938:2
FBgn0046247:1 CG5938:1
FBgn0046247:4 CG5938:4
FBgn0046247:5 CG5938:5
FBgn0046247:7 CG5938:7
FBgn0046247:8 CG5938:8
FBgn0046247:3 CG5938:3
FBgn0046247:6 CG5938:6

5 Transcripts

DB identifier Gene
FBtr0334729 CG5938
FBtr0085159 CG5938
FBtr0085160 CG5938
FBtr0085161 CG5938
FBtr0085162 CG5938

10 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0085159-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0085160-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0085161-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0085162-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0334729-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0085159-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0085160-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0085161-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0085162-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0334729-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
43290 NCBI Entrez Gene identifiers FBgn0046247
68176 BioGRID FBgn0046247

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 565.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 726.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 263.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 489.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 387.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 877.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 399.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 586.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 490.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 492.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 615.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 589.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 504.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 535.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 510.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 684.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 567.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 474.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 421.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 431.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 760.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 589.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 431.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 783.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 459.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1529.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 992.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 498.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 493.0
FBgn0046247 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 613.0

8 Introns

DB identifier
Organism . Name
intron_FBgn0046247:1_FBgn0046247:4 Drosophila melanogaster
intron_FBgn0046247:4_FBgn0046247:5 Drosophila melanogaster
intron_FBgn0046247:5_FBgn0046247:7 Drosophila melanogaster
intron_FBgn0046247:5_FBgn0046247:8 Drosophila melanogaster
intron_FBgn0046247:3_FBgn0046247:5 Drosophila melanogaster
intron_FBgn0046247:5_FBgn0046247:6 Drosophila melanogaster
intron_FBgn0046247:1_FBgn0046247:2 Drosophila melanogaster
intron_FBgn0046247:2_FBgn0046247:5 Drosophila melanogaster

20 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage CG5938 none 0.489208249   19067489
Lipid storage CG5938 none 0   19067489
Cell size and cell-cycle regulation (1) CG5938 none sp   16496002
Muscle morphogenesis and function (1) CG5938 Flightless np   20220848
Muscle morphogenesis and function (1) CG5938 Weak flyer np   20220848
Muscle morphogenesis and function (4) CG5938 Frayed myofibrils, fuzzy (broadened) Z-line, actin aggregates np   20220848
Heat nociception (1) CG5938 none 1.41   21074052
Heart development and function (1) CG5938 none 1   20371351
Serratia marcescens infection (1) CG5938 none -0.473684210526315   19520911
Notch pathway regulation (4) CG5938 none 0   19363474
Notch pathway regulation (4) CG5938 none 0   19363474
Adiposity regulation (1) CG5938 none 0.083   20074523
Blood cell homeostasis regulation (1) CG5938 none np   20540764
Blood cell homeostasis regulation (2) CG5938 none np   20540764
RTK-Ras-ERK pathway regulation (1) CG5938 none -1.28 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) CG5938 Increased ERK phosphorylation after EGF stimulation 2.15 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) CG5938 none 0.52 30 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) CG5938 Increased ERK phosphorylation after sSpitz and EGF stimulation 1.89 10 minutes sSpitz stimulation 22028469
Hippo pathway regulation CG5938 none 0.8   23263283
Glycosylation regulation (1) CG5938 none sp   21203496

0 Submissions