modENCODE |  Help |  blog

Gene : GAPsec D. melanogaster

DB identifier  ? FBgn0035916 Secondary Identifier  ? CG5978
Name  ? GTPase activating protein, SECIS-dependent read-through Source  FlyBase
  • synonyms:
  • FBgn0046265,
  • CG5978,
  • FBgn0035916,
  • BEST:LD24460,
  • FBan0005978,
  • dGAPsec

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

6 Alleles

DB identifier Symbol Allele Class Organism
FBal0258930 GAPsec[KK101310]   Drosophila melanogaster
FBal0161211 GAPsec[c05919] amorphic allele - molecular evidence Drosophila melanogaster
FBal0248046 GAPsec[Act5C.PH-T]   Drosophila melanogaster
FBal0248047 GAPsec[R138K.Act5C]   Drosophila melanogaster
FBal0204899 GAPsec[GD9897]   Drosophila melanogaster
FBal0274927 GAPsec[NIG.5978R]   Drosophila melanogaster

40 Clones

Secondary Identifier DB identifier
DPiM_FI07835 FBcl0741287
EP09521 FBcl0087333
EK242120 FBcl0104536
EK259155 FBcl0104540
EK211605 FBcl0104542
EK095925 FBcl0104544
EK269059 FBcl0104554
EK198956 FBcl0104556
GM03081 FBcl0143176
LD10909 FBcl0159437
LD16072 FBcl0159447
LD29508 FBcl0174281
LD25070 FBcl0174282
LD33352 FBcl0174283
LD24460 FBcl0174286
LD30280 FBcl0174288
LD27130 FBcl0174292
RE49690 FBcl0225045
RE17486 FBcl0225048
RE46515 FBcl0225955
RE12116 FBcl0225970
RE21392 FBcl0225972
SD09559 FBcl0290026
SD05544 FBcl0290029
SD01544 FBcl0290140
RM01924 FBcl0381386
RM02324 FBcl0381387
RM01824 FBcl0381388
RM02124 FBcl0381389
FI07835 FBcl0475015

5 Exons

DB identifier Symbol
FBgn0035916:4 GAPsec:4
FBgn0035916:3 GAPsec:3
FBgn0035916:2 GAPsec:2
FBgn0035916:1 GAPsec:1
FBgn0035916:5 GAPsec:5

1 Transcripts

DB identifier Gene
FBtr0076648 GAPsec

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0076648-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0076648-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

1 Cross References

Identifier
Source . Name

Subject . Primary Identifier
38987 NCBI Entrez Gene identifiers FBgn0035916

9 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 315.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 328.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 526.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 264.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 214.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 180.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 441.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 234.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 231.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 398.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 339.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 306.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 320.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 388.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 173.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 194.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 270.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 167.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 418.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 330.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 297.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 363.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 472.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 601.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 202.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 962.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 547.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 379.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 236.0
FBgn0035916 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 526.0

4 Introns

DB identifier
Organism . Name
intron_FBgn0035916:5_FBgn0035916:4 Drosophila melanogaster
intron_FBgn0035916:4_FBgn0035916:3 Drosophila melanogaster
intron_FBgn0035916:3_FBgn0035916:2 Drosophila melanogaster
intron_FBgn0035916:2_FBgn0035916:1 Drosophila melanogaster

18 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage GAPsec none -1.197563893   19067489
Lipid storage GAPsec none 0.578269776   19067489
Cell size and cell-cycle regulation (1) GAPsec none sp   16496002
Muscle morphogenesis and function (1) GAPsec none np   20220848
Muscle morphogenesis and function (1) GAPsec none np   20220848
Heat nociception (1) GAPsec none -1.17   21074052
Heat nociception (1) GAPsec none -1.17   21074052
Heart development and function (1) GAPsec none 1   20371351
Serratia marcescens infection (1) GAPsec none -0.0483870967741935   19520911
Notch pathway regulation (4) GAPsec none 0   19363474
Notch pathway regulation (4) GAPsec none 0   19363474
Adiposity regulation (1) GAPsec none -0.176   20074523
RTK-Ras-ERK pathway regulation (1) GAPsec none -0.21 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) GAPsec none -0.28 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) GAPsec none 0.19 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) GAPsec Increased ERK phosphorylation after sSpitz and EGF stimulation 1.63 30 minutes sSpitz stimulation 22028469
Hippo pathway regulation GAPsec none -0.75   23263283
Glycosylation regulation (1) GAPsec none sp   21203496

0 Submissions