modENCODE |  Help |  blog

Gene : CG4887 D. melanogaster

DB identifier  ? FBgn0031318 Secondary Identifier  ? CG4887
Source  FlyBase
  • synonyms:
  • cg4887,
  • FBgn0031318,
  • FBan0004887

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

5 Alleles

DB identifier Symbol Allele Class Organism
FBal0240132 CG4887[MB12014]   Drosophila melanogaster
FBal0204457 CG4887[GD11458]   Drosophila melanogaster
FBal0204458 CG4887[GD17077]   Drosophila melanogaster
FBal0237083 CG4887[KK110872]   Drosophila melanogaster
FBal0274419 CG4887[NIG.4887R]   Drosophila melanogaster

55 Clones

Secondary Identifier DB identifier
FI21118 FBcl0743429
EK009639 FBcl0058982
EK001339 FBcl0059048
EK168762 FBcl0059070
EK252537 FBcl0059090
EK104411 FBcl0059114
EK111105 FBcl0059138
EK107131 FBcl0059182
EK223338 FBcl0060126
EK151834 FBcl0060774
EP03509 FBcl0074193
GH24110 FBcl0105361
GH08286 FBcl0105363
GH26241 FBcl0105365
GH16477 FBcl0105369
GM04235 FBcl0137477
GM08783 FBcl0137483
HL07344 FBcl0148784
LD03382 FBcl0151863
LD31356 FBcl0164340
LD27958 FBcl0164344
LD35718 FBcl0164345
LD23919 FBcl0164346
LD41643 FBcl0164350
LD26476 FBcl0164352
LD26463 FBcl0164353
LD44373 FBcl0164354
RE06301 FBcl0195741
RE47630 FBcl0195771
RE29838 FBcl0195780

13 Exons

DB identifier Symbol
FBgn0031318:1 CG4887:1
FBgn0031318:2 CG4887:2
FBgn0031318:3 CG4887:3
FBgn0031318:4 CG4887:4
FBgn0031318:5 CG4887:5
FBgn0031318:6 CG4887:6
FBgn0031318:7 CG4887:7
FBgn0031318:8 CG4887:8
FBgn0031318:9 CG4887:9
FBgn0031318:10 CG4887:10
FBgn0031318:11 CG4887:11
FBgn0031318:12 CG4887:12
FBgn0031318:13 CG4887:13

2 Transcripts

DB identifier Gene
FBtr0077966 CG4887
FBtr0331288 CG4887

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0077966-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0331288-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0077966-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331288-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
33304 NCBI Entrez Gene identifiers FBgn0031318
59555 BioGRID FBgn0031318

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 775.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 855.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1086.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1179.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1181.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 884.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 833.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 891.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 965.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 945.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 823.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 560.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1198.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 629.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 979.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 731.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 1583.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 946.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 981.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 932.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 844.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1093.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 910.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1701.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1407.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1786.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1399.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1411.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1241.0
FBgn0031318 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1069.0

12 Introns

DB identifier
Organism . Name
intron_FBgn0031318:1_FBgn0031318:2 Drosophila melanogaster
intron_FBgn0031318:2_FBgn0031318:3 Drosophila melanogaster
intron_FBgn0031318:3_FBgn0031318:4 Drosophila melanogaster
intron_FBgn0031318:4_FBgn0031318:5 Drosophila melanogaster
intron_FBgn0031318:5_FBgn0031318:6 Drosophila melanogaster
intron_FBgn0031318:6_FBgn0031318:7 Drosophila melanogaster
intron_FBgn0031318:7_FBgn0031318:8 Drosophila melanogaster
intron_FBgn0031318:8_FBgn0031318:9 Drosophila melanogaster
intron_FBgn0031318:9_FBgn0031318:10 Drosophila melanogaster
intron_FBgn0031318:10_FBgn0031318:11 Drosophila melanogaster
intron_FBgn0031318:11_FBgn0031318:12 Drosophila melanogaster
intron_FBgn0031318:11_FBgn0031318:13 Drosophila melanogaster

24 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage CG4887 none 0.726842005   19067489
Lipid storage CG4887 none 0.532385465   19067489
Lipid storage CG4887 none 0.082555588   19067489
Lipid storage CG4887 none 0.005808559   19067489
Alternative splicing CG4887 none sp   15492211
mRNA decay CG4887 No change np   15766526
Cell size and cell-cycle regulation (1) CG4887 none sp   16496002
Muscle morphogenesis and function (1) CG4887 none np   20220848
Muscle morphogenesis and function (1) CG4887 none np   20220848
Heat nociception (1) CG4887 Lethal -0.33   21074052
Heat nociception (1) CG4887 Increased noxious heat avoidance 2.13   21074052
Heat nociception (1) CG4887 none -0.79   21074052
Heart development and function (1) CG4887 none 1   20371351
Heart development and function (1) CG4887 none 1   20371351
Serratia marcescens infection (1) CG4887 none 0.239316239316239   19520911
Serratia marcescens infection (1) CG4887 none 0.81   19520911
Serratia marcescens infection (1) CG4887 none 0.147058823529411   19520911
Notch pathway regulation (4) CG4887 Bristle morphology defects, notum malformation death sp   19363474
Notch pathway regulation (4) CG4887 none 0   19363474
Notch pathway regulation (4) CG4887 none 0   19363474
Adiposity regulation (1) CG4887 none -0.209   20074523
Adiposity regulation (1) CG4887 none 0.397   20074523
Hippo pathway regulation CG4887 none 0.65   23263283
Glycosylation regulation (1) CG4887 none sp   21203496

0 Submissions