modENCODE |  Help |  blog

Gene : Pdcd4 D. melanogaster

DB identifier  ? FBgn0030520 Secondary Identifier  ? CG10990
Name  ? Programmed cell death 4 ortholog Source  FlyBase
  • synonyms:
  • CG10990,
  • FBan0010990,
  • Programmed cell death 4,
  • FBgn0030520

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

24 Alleles

DB identifier Symbol Allele Class Organism
FBal0148343 Pdcd4[G93] amorphic allele - genetic evidence Drosophila melanogaster
FBal0267758 Pdcd4[1] amorphic allele - genetic evidence Drosophila melanogaster
FBal0281229 Pdcd4[GL01526]   Drosophila melanogaster
FBal0270689 Pdcd4[NIG.10990R]   Drosophila melanogaster
FBal0265408 Pdcd4[BG02676]   Drosophila melanogaster
FBal0223909 Pdcd4[d06520]   Drosophila melanogaster
FBal0187742 Pdcd4[e03856]   Drosophila melanogaster
FBal0187745 Pdcd4[d00598]   Drosophila melanogaster
FBal0223903 Pdcd4[NP0636]   Drosophila melanogaster
FBal0199233 Pdcd4[GD7160]   Drosophila melanogaster
FBal0223906 Pdcd4[CB-6515-3]   Drosophila melanogaster
FBal0223902 Pdcd4[CB-5619-3]   Drosophila melanogaster
FBal0223907 Pdcd4[CB-6903-3]   Drosophila melanogaster
FBal0126648 Pdcd4[BG00494]   Drosophila melanogaster
FBal0223908 Pdcd4[UM-8205-3]   Drosophila melanogaster
FBal0223904 Pdcd4[GG01675]   Drosophila melanogaster
FBal0187744 Pdcd4[d04016]   Drosophila melanogaster
FBal0265199 Pdcd4[BG00495]   Drosophila melanogaster
FBal0263058 Pdcd4[GLV21077]   Drosophila melanogaster
FBal0223905 Pdcd4[CB02351]   Drosophila melanogaster
FBal0187741 Pdcd4[e04394]   Drosophila melanogaster
FBal0187740 Pdcd4[f06108]   Drosophila melanogaster
FBal0187743 Pdcd4[d06611]   Drosophila melanogaster
FBal0261337 Pdcd4[CPTI004527]   Drosophila melanogaster

256 Clones

Secondary Identifier DB identifier
UUGC0022 FBcl0001091
UUGC0839 FBcl0004699
AT14587 FBcl0028443
AT19462 FBcl0028447
AT15177 FBcl0028707
EC01241 FBcl0068857
EP22060 FBcl0083929
EN06722 FBcl0097653
EN04210 FBcl0097739
EN11507 FBcl0097741
EN13526 FBcl0097743
EN13540 FBcl0097745
GH25674 FBcl0117065
GH27502 FBcl0117229
GH21540 FBcl0117253
GH22184 FBcl0122117
GH20475 FBcl0122119
EK117519 FBcl0126002
EK073038 FBcl0126100
EK218949 FBcl0126250
EK252422 FBcl0127950
EK232127 FBcl0127952
EK189124 FBcl0127972
EK222452 FBcl0127974
EK244847 FBcl0127988
EK234336 FBcl0127994
EK263429 FBcl0127998
EK163640 FBcl0128008
EK074806 FBcl0128018
EK093515 FBcl0128036

8 Exons

DB identifier Symbol
FBgn0030520:4 CG10990:4
FBgn0030520:7 CG10990:7
FBgn0030520:5 CG10990:5
FBgn0030520:3 CG10990:3
FBgn0030520:2 CG10990:2
FBgn0030520:8 CG10990:8
FBgn0030520:6 CG10990:6
FBgn0030520:1 CG10990:1

4 Transcripts

DB identifier Gene
FBtr0331711 Pdcd4
FBtr0073840 Pdcd4
FBtr0331712 Pdcd4
FBtr0112981 Pdcd4

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0073840-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0112981-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0331711-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0331712-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0073840-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0112981-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331711-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0331712-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
32337 NCBI Entrez Gene identifiers FBgn0030520
58710 BioGRID FBgn0030520

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 3850.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 3363.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 3342.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 2844.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 3149.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 3925.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 929.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 2368.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 2595.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 2524.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 2821.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 755.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 4474.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1339.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 3996.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 3021.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 3630.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 914.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 4143.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 4378.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 2997.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 2779.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 3549.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 2469.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1134.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 3981.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 3999.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 3811.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1852.0
FBgn0030520 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1451.0

9 Introns

DB identifier
Organism . Name
intron_FBgn0030520:7_FBgn0030520:4 Drosophila melanogaster
intron_FBgn0030520:4_FBgn0030520:3 Drosophila melanogaster
intron_FBgn0030520:3_FBgn0030520:1 Drosophila melanogaster
intron_FBgn0030520:8_FBgn0030520:6 Drosophila melanogaster
intron_FBgn0030520:6_FBgn0030520:5 Drosophila melanogaster
intron_FBgn0030520:5_FBgn0030520:3 Drosophila melanogaster
intron_FBgn0030520:7_FBgn0030520:5 Drosophila melanogaster
intron_FBgn0030520:3_FBgn0030520:2 Drosophila melanogaster
intron_FBgn0030520:8_FBgn0030520:5 Drosophila melanogaster

17 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Pdcd4 none 2.200157486   19067489
Lipid storage Pdcd4 none 1.014558467   19067489
Cell size and cell-cycle regulation (1) Pdcd4 none sp   16496002
Microtubule assembly and organization Pdcd4 none np   18463163
Muscle morphogenesis and function (1) Pdcd4 none np   20220848
Muscle morphogenesis and function (1) Pdcd4 none np   20220848
Heat nociception (1) Pdcd4 none -1.17   21074052
Heart development and function (1) Pdcd4 none 1   20371351
Serratia marcescens infection (1) Pdcd4 none 0.555555555555555   19520911
Serratia marcescens infection (1) Pdcd4 none 0.197368421052631   19520911
Notch pathway regulation (4) Pdcd4 none 0   19363474
Notch pathway regulation (4) Pdcd4 none 0   19363474
PGN-induced dJNK phosphorylation Pdcd4 Increased P-JNK protein expression with PGN 2.6 15 min PGN induction 19893628
Adiposity regulation (1) Pdcd4 none -0.14   20074523
Adiposity regulation (1) Pdcd4 none 0.042   20074523
Hippo pathway regulation Pdcd4 none 0.22   23263283
Glycosylation regulation (1) Pdcd4 none sp   21203496

0 Submissions