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Gene : Trn D. melanogaster

DB identifier  ? FBgn0024921 Secondary Identifier  ? CG7398
Name  ? Transportin Source  FlyBase
  • synonyms:
  • Trn1,
  • IMPbeta2,
  • TRN,
  • FBgn0024921,
  • Tm,
  • dTRN,
  • Transportin,
  • CG7398,
  • FBan0007398

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6 Alleles

DB identifier Symbol Allele Class Organism
FBal0260568 Trn[MI03279]   Drosophila melanogaster
FBal0242285 Trn[JF02697]   Drosophila melanogaster
FBal0208848 Trn[GD33]   Drosophila melanogaster
FBal0208849 Trn[GD2529]   Drosophila melanogaster
FBal0235965 Trn[KK108990]   Drosophila melanogaster
FBal0275556 Trn[NIG.7398R]   Drosophila melanogaster

172 Clones

Secondary Identifier DB identifier
ESG0117d.B21_C12 FBcl0003209
EK217643 FBcl0060846
EK246658 FBcl0060870
EK192435 FBcl0061022
EK068129 FBcl0061050
EK164424 FBcl0061076
EK205202 FBcl0061102
EK135626 FBcl0061180
EK074350 FBcl0061208
EK295411 FBcl0061258
EK005545 FBcl0061284
EK065243 FBcl0061334
EK074633 FBcl0061362
EK118226 FBcl0061388
EK002325 FBcl0061414
EK166502 FBcl0061438
EK230708 FBcl0061464
EK071150 FBcl0061570
EK135017 FBcl0061596
EK142809 FBcl0061692
EK191044 FBcl0061756
EK294602 FBcl0061902
EK072222 FBcl0062028
EK246656 FBcl0062046
EK058107 FBcl0062084
EK166351 FBcl0062228
EK268829 FBcl0062246
EC26561 FBcl0066423
EC37561 FBcl0066427
GH10150 FBcl0107543

14 Exons

DB identifier Symbol
FBgn0024921:2 Trn:2
FBgn0024921:4 Trn:4
FBgn0024921:6 Trn:6
FBgn0024921:7 Trn:7
FBgn0024921:8 Trn:8
FBgn0024921:9 Trn:9
FBgn0024921:10 Trn:10
FBgn0024921:11 Trn:11
FBgn0024921:12 Trn:12
FBgn0024921:14 Trn:14
FBgn0024921:5 Trn:5
FBgn0024921:13 Trn:13
FBgn0024921:3 Trn:3
FBgn0024921:1 Trn:1

4 Transcripts

DB identifier Gene
FBtr0077000 Trn
FBtr0077001 Trn
FBtr0077002 Trn
FBtr0333059 Trn

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0077000-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0077001-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0077002-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0333059-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0077000-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0077001-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0077002-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0333059-3-prime-utr Drosophila melanogaster

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0 Pathways

3 Cross References

Identifier
Source . Name

Subject . Primary Identifier
38721 NCBI Entrez Gene identifiers FBgn0024921
38722 NCBI Entrez Gene identifiers FBgn0024921
64174 BioGRID FBgn0024921

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 1349.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 1579.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1365.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1219.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1894.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 1255.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 2139.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1263.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 1183.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1863.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 1990.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1109.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1248.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1224.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1752.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 1884.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 1910.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1326.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1032.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 1624.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 2173.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1844.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 1459.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1631.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 1295.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 5783.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 5642.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 2174.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 2052.0
FBgn0024921 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 2378.0

14 Introns

DB identifier
Organism . Name
intron_FBgn0024921:1_FBgn0024921:5 Drosophila melanogaster
intron_FBgn0024921:5_FBgn0024921:6 Drosophila melanogaster
intron_FBgn0024921:6_FBgn0024921:7 Drosophila melanogaster
intron_FBgn0024921:7_FBgn0024921:8 Drosophila melanogaster
intron_FBgn0024921:8_FBgn0024921:9 Drosophila melanogaster
intron_FBgn0024921:9_FBgn0024921:10 Drosophila melanogaster
intron_FBgn0024921:10_FBgn0024921:11 Drosophila melanogaster
intron_FBgn0024921:11_FBgn0024921:12 Drosophila melanogaster
intron_FBgn0024921:12_FBgn0024921:14 Drosophila melanogaster
intron_FBgn0024921:2_FBgn0024921:4 Drosophila melanogaster
intron_FBgn0024921:4_FBgn0024921:6 Drosophila melanogaster
intron_FBgn0024921:2_FBgn0024921:5 Drosophila melanogaster
intron_FBgn0024921:12_FBgn0024921:13 Drosophila melanogaster
intron_FBgn0024921:3_FBgn0024921:4 Drosophila melanogaster

32 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Trn none -5.332681568   19067489
Lipid storage Trn none 0.028618004   19067489
Constitutive protein secretion and Golgi organization (1) Trn Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) Trn none sp   16496002
Cell size and cell-cycle regulation (1) Trn none sp   16496002
Candida albicans phagocytosis (1) Trn Decreased Candida albicans phagocytosis np   16336044
Candida albicans phagocytosis (2) Trn none 54   16336044
Candida albicans phagocytosis (3) Trn Decreased latex beads phagocytosis 41   16336044
Mutant human huntingtin aggregation Trn Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) Trn Lethal np   20220848
Muscle morphogenesis and function (1) Trn Lethal np   20220848
Muscle morphogenesis and function (1) Trn none np   20220848
Heat nociception (1) Trn Developmentally lethal 0   21074052
Heat nociception (1) Trn none -1.17   21074052
Heart development and function (1) Trn none 1   20371351
Serratia marcescens infection (1) Trn none 1.03703703703703   19520911
Notch pathway regulation (4) Trn Notum malformation death 9   19363474
Notch pathway regulation (4) Trn none 0   19363474
Notch pathway regulation (4) Trn Completely lethal (pupal) sp   19363474
Muscle assembly and maintenance Trn Muscles with short and/or thin myofibrils severe   18359903
Self-renewal and differentiation in neural stem cells Trn GFP aggregates number, GFP aggregates size, lethal sp   21549331
Self-renewal and differentiation in neural stem cells Trn GFP aggregates number, GFP aggregates size, ganglion mother cell shorter lineages, neuroblast underproliferation, lethal sp   21549331
Self-renewal and differentiation in neural stem cells Trn GFP aggregates number, GFP aggregates size, neuroblast cell shape, ganglion mother cell shorter lineages, ganglion mother cell shape, neuroblast underproliferation, lethal sp   21549331
Adiposity regulation (1) Trn none -0.538   20074523
RTK-Ras-ERK pathway regulation (1) Trn Decreased ERK phosphorylation after EGF stimulation -2.85 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) Trn none -0.97 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) Trn none 1.29 10 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) Trn Increased ERK phosphorylation after sSpitz and EGF stimulation 1.77 30 minutes sSpitz stimulation 22028469
Wnt proteins secretion Trn none 0.1   22094269
Hippo pathway regulation Trn none -1.24   23263283

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