modENCODE |  Help |  blog

Gene : phr6-4 D. melanogaster

DB identifier  ? FBgn0016054 Secondary Identifier  ? CG2488
Name  ? (6-4)-photolyase Source  FlyBase
  • synonyms:
  • phr6-4,
  • phr(6-4),
  • 64PHR,
  • 38D.25,
  • 6-4 photolyase,
  • photolyase,
  • (6-4)photolyase,
  • CG2488,
  • D6-4,
  • Dm 64,
  • (6-4) photolyase,
  • FBgn0016054,
  • FBan0002488

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

5 Alleles

DB identifier Symbol Allele Class Organism
FBal0266399 phr6-4[GL01084]   Drosophila melanogaster
FBal0210339 phr6-4[GD4191]   Drosophila melanogaster
FBal0221859 phr6-4[EY00214a]   Drosophila melanogaster
FBal0235178 phr6-4[KK107807]   Drosophila melanogaster
FBal0273128 phr6-4[NIG.2488R]   Drosophila melanogaster

26 Clones

Secondary Identifier DB identifier
UUGC1045 FBcl0005599
EK293835 FBcl0083748
EK136032 FBcl0084218
GM03047 FBcl0140251
RE11660 FBcl0207146
RE18308 FBcl0207185
RE21020 FBcl0207186
RE37954 FBcl0207187
RE49645 FBcl0207189
RE32289 FBcl0207190
RE32586 FBcl0207198
RE47582 FBcl0207199
SD24381 FBcl0281083
SD26613 FBcl0281085
Dmel_dig_014146_0649_1524 FBcl0375255
FGH115A07 FBcl0387673
FI01404 FBcl0474792
RP004210462 FBcl0614014
RP004136741 FBcl0614015
RP004552124 FBcl0614016
RP004386174 FBcl0614017
RP004321391 FBcl0614019
RP004249410 FBcl0614020
RP004282538 FBcl0614021
28183 FBcl0406937
191366 FBcl0406953

7 Exons

DB identifier Symbol
FBgn0016054:7 phr6-4:7
FBgn0016054:5 phr6-4:5
FBgn0016054:2 phr6-4:2
FBgn0016054:1 phr6-4:1
FBgn0016054:3 phr6-4:3
FBgn0016054:4 phr6-4:4
FBgn0016054:6 phr6-4:6

4 Transcripts

DB identifier Gene
FBtr0081404 phr6-4
FBtr0081405 phr6-4
FBtr0336830 phr6-4
FBtr0336829 phr6-4

8 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0081404-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0081405-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0336829-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0336830-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0081404-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0081405-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0336829-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0336830-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

1 Cross References

Identifier
Source . Name

Subject . Primary Identifier
35322 NCBI Entrez Gene identifiers FBgn0016054

9 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
TrEMBL data set http://www.ebi.ac.uk/trembl/
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 250.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 160.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 103.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 152.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 200.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 200.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 178.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 436.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 530.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 448.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 356.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 160.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 178.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 162.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 210.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 236.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 198.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 271.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 315.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 169.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 200.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 203.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 376.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 302.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 357.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1570.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 491.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 430.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 330.0
FBgn0016054 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 236.0

7 Introns

DB identifier
Organism . Name
intron_FBgn0016054:6_FBgn0016054:2 Drosophila melanogaster
intron_FBgn0016054:2_FBgn0016054:1 Drosophila melanogaster
intron_FBgn0016054:7_FBgn0016054:3 Drosophila melanogaster
intron_FBgn0016054:3_FBgn0016054:1 Drosophila melanogaster
intron_FBgn0016054:4_FBgn0016054:1 Drosophila melanogaster
intron_FBgn0016054:7_FBgn0016054:5 Drosophila melanogaster
intron_FBgn0016054:5_FBgn0016054:2 Drosophila melanogaster

12 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage phr6-4 none -0.047205581   19067489
Lipid storage phr6-4 none 0.694646353   19067489
Insect dengue virus infection phr6-4 Inhibition of dengue virus propagation 2.5 (0.0004)   19396146
Cell size and cell-cycle regulation (1) phr6-4 none sp   16496002
Muscle morphogenesis and function (1) phr6-4 none np   20220848
Heat nociception (1) phr6-4 none -1.17   21074052
Heart development and function (1) phr6-4 none 1   20371351
Serratia marcescens infection (1) phr6-4 none -0.220588235294117   19520911
Notch pathway regulation (4) phr6-4 none 0   19363474
Adiposity regulation (1) phr6-4 none -0.322   20074523
Hippo pathway regulation phr6-4 none 0.97   23263283
Glycosylation regulation (1) phr6-4 none sp   21203496

0 Submissions