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Gene : v D. melanogaster

DB identifier  ? FBgn0003965 Secondary Identifier  ? CG2155
Name  ? vermilion Source  FlyBase
  • synonyms:
  • Vermillion,
  • Tryptophan 2,3-dioxygenase,
  • DmTDO,
  • Ver,
  • NP_511113,
  • 152559_at,
  • TDO,
  • vm,
  • FBan0002155,
  • Vermilion,
  • v,
  • CG2155,
  • FBgn0003965

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784 Alleles

DB identifier Symbol Allele Class Organism
FBal0017656 v[1] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0017654 v[+37]   Drosophila melanogaster
FBal0017659 v[2] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0017676 v[36f]   Drosophila melanogaster
FBal0017784 v[H2a]   Drosophila melanogaster
FBal0017793 v[k]   Drosophila melanogaster
FBal0033073 v[s]   Drosophila melanogaster
FBal0050730 v[Amh]   Drosophila melanogaster
FBal0230246 v[W1]   Drosophila melanogaster
FBal0035895 v[rv]   Drosophila melanogaster
FBal0059846 v[610]   Drosophila melanogaster
FBal0123646 v[2E2-12]   Drosophila melanogaster
FBal0123637 v[2E2-21]   Drosophila melanogaster
FBal0123628 v[2E2-9]   Drosophila melanogaster
FBal0082070 v[VCA520]   Drosophila melanogaster
FBal0059817 v[640]   Drosophila melanogaster
FBal0017707 v[B1]   Drosophila melanogaster
FBal0082074 v[VCA513]   Drosophila melanogaster
FBal0050736 v[M-17]   Drosophila melanogaster
FBal0059850 v[606]   Drosophila melanogaster
FBal0150177 v[EH-47]   Drosophila melanogaster
FBal0059832 v[625]   Drosophila melanogaster
FBal0082072 v[VCA515]   Drosophila melanogaster
FBal0040061 v[+t1.8]   Drosophila melanogaster
FBal0046643 v[2503]   Drosophila melanogaster
FBal0059875 v[426]   Drosophila melanogaster
FBal0123632 v[2E2-6]   Drosophila melanogaster
FBal0059798 v[813]   Drosophila melanogaster
FBal0017803 v[OS]   Drosophila melanogaster
FBal0017748 v[E195]   Drosophila melanogaster

11 Clones

Secondary Identifier DB identifier
DPiM_GH14143 FBcl0741969
GH21188 FBcl0120165
GH14143 FBcl0120197
LD08604 FBcl0157397
IP14374 FBcl0318461
RP004132175 FBcl0498540
RP004268940 FBcl0498541
RP004260781 FBcl0498542
RP004257354 FBcl0498543
RP004456299 FBcl0498544
RP004201083 FBcl0498545

6 Exons

DB identifier Symbol
FBgn0003965:1 v:1
FBgn0003965:2 v:2
FBgn0003965:3 v:3
FBgn0003965:4 v:4
FBgn0003965:5 v:5
FBgn0003965:6 v:6

1 Transcripts

DB identifier Gene
FBtr0073386 v

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0073386-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0073386-3-prime-utr Drosophila melanogaster

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2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
32026 NCBI Entrez Gene identifiers FBgn0003965
58442 BioGRID FBgn0003965

10 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 113.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 48.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 51.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1286.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 70.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 207.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 203.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 89.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 31.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 70.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 39.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 154.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 95.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 167.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 114.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 135.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 40.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 116.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 67.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 46.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 71.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 33.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 10.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 29.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 56.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 76.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 85.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 74.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 65.0
FBgn0003965 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 40.0

5 Introns

DB identifier
Organism . Name
intron_FBgn0003965:1_FBgn0003965:2 Drosophila melanogaster
intron_FBgn0003965:2_FBgn0003965:3 Drosophila melanogaster
intron_FBgn0003965:3_FBgn0003965:4 Drosophila melanogaster
intron_FBgn0003965:4_FBgn0003965:5 Drosophila melanogaster
intron_FBgn0003965:5_FBgn0003965:6 Drosophila melanogaster

15 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage v none 0.458366219   19067489
Lipid storage v none -0.691481497   19067489
Lipid storage v none 0.553645915   19067489
Lipid storage v none 1.584299588   19067489
Chlamydia caviae infection v Decreased Chlamydia caviae infection np   17967059
Cell size and cell-cycle regulation (1) v Decreased G2 DNA content, increased cytokinesis sp   16496002
Cell size and cell-cycle regulation (2) v none 1.456   16496002
Cell size and cell-cycle regulation (3) v none 447   16496002
Muscle morphogenesis and function (1) v none np   20220848
Heat nociception (1) v none -1.17   21074052
Heart development and function (1) v none 1   20371351
Serratia marcescens infection (1) v none 0.442622950819672   19520911
Notch pathway regulation (4) v none 0   19363474
Adiposity regulation (1) v none -0.369   20074523
Glycosylation regulation (1) v none sp   21203496

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