modENCODE |  Help |  blog

Gene : srp D. melanogaster

DB identifier  ? FBgn0003507 Secondary Identifier  ? CG3992
Name  ? serpent Source  FlyBase
  • synonyms:
  • DmGATAb,
  • SERPENT,
  • FBgn0011478,
  • A7.1,
  • CG3992,
  • ABF,
  • FBgn0010376,
  • GATAb,
  • dGATAb,
  • spt,
  • GATA,
  • A-box-binding factor,
  • serpentD,
  • FBan0003992,
  • FBgn0003507,
  • SRP,
  • srpD,
  • FBgn0010753,
  • l(3)01549,
  • l(3)89B2,
  • l(3)neo45

Sequence Feature Displayer

Publication Counts Displayer

Genomics

Gene Ontology Displayer

Homologue Displayer

Mod Mine G Browse Displayer

Overlapping Features Displayer

Regulatory Regions Displayer

79 Alleles

DB identifier Symbol Allele Class Organism
FBal0146773 srp[PL00779]   Drosophila melanogaster
FBal0011058 srp[neo45]   Drosophila melanogaster
FBal0009417 srp[01549] amorphic allele - genetic evidence Drosophila melanogaster
FBal0257747 srp[HMS01083]   Drosophila melanogaster
FBal0257892 srp[HMS01298]   Drosophila melanogaster
FBal0259906 srp[KK112327]   Drosophila melanogaster
FBal0093777 srp[57]   Drosophila melanogaster
FBal0093778 srp[33]   Drosophila melanogaster
FBal0093779 srp[149]   Drosophila melanogaster
FBal0056075 srp[PZRV3] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056105 srp[PZHO17] amorphic allele - genetic evidence Drosophila melanogaster
FBal0056088 srp[PZRV14] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056089 srp[PZRV13] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056080 srp[PZRV21] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056079 srp[PZRV22] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0016080 srp[1]   Drosophila melanogaster
FBal0056111 srp[PZHO11] amorphic allele - genetic evidence Drosophila melanogaster
FBal0016082 srp[3] amorphic allele - genetic evidence, hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056076 srp[PZRV2] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0016081 srp[2] amorphic allele - genetic evidence Drosophila melanogaster
FBal0056069 srp[PZRV9] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056083 srp[PZRV19] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0056099 srp[PZHO3] amorphic allele - genetic evidence Drosophila melanogaster
FBal0056077 srp[PZRV24] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0051092 srp[unspecified]   Drosophila melanogaster
FBal0056102 srp[PZHO1] amorphic allele - genetic evidence Drosophila melanogaster
FBal0056100 srp[PZHO2] amorphic allele - genetic evidence Drosophila melanogaster
FBal0056074 srp[PZRV4] hypomorphic allele - genetic evidence Drosophila melanogaster
FBal0190021 srp[Act5C.PH]   Drosophila melanogaster
FBal0056096 srp[PZHO6] amorphic allele - genetic evidence Drosophila melanogaster

36 Clones

Secondary Identifier DB identifier
EK203816 FBcl0055710
GH11649 FBcl0129769
LD44281 FBcl0176006
RE57190 FBcl0229493
RE52907 FBcl0229499
RE56302 FBcl0229519
RE53205 FBcl0229520
RE11141 FBcl0229546
RE22393 FBcl0229550
RE19581 FBcl0229643
RE48332 FBcl0229717
RH11819 FBcl0267969
RH47991 FBcl0267977
RH62215 FBcl0268015
RH49919 FBcl0268444
RH48157 FBcl0268491
RH10262 FBcl0268493
RH62612 FBcl0268497
SD07261 FBcl0287812
SD28113 FBcl0287818
EC054182 FBcl0299874
EC054171 FBcl0299875
IP15686 FBcl0319179
IP15786 FBcl0319180
IP15986 FBcl0319181
RP004247335 FBcl0541576
RP004148112 FBcl0541566
RP004474148 FBcl0541568
RP004207988 FBcl0541569
RP004375005 FBcl0541571

12 Exons

DB identifier Symbol
FBgn0003507:5 srp:5
FBgn0003507:6 srp:6
FBgn0003507:7 srp:7
FBgn0003507:9 srp:9
FBgn0003507:10 srp:10
FBgn0003507:11 srp:11
FBgn0003507:4 srp:4
FBgn0003507:8 srp:8
FBgn0003507:1 srp:1
FBgn0003507:3 srp:3
FBgn0003507:2 srp:2
FBgn0003507:12 srp:12

6 Transcripts

DB identifier Gene
FBtr0335424 srp
FBtr0083216 srp
FBtr0335423 srp
FBtr0100595 srp
FBtr0306244 srp
FBtr0083215 srp

12 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0083216-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0083215-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0100595-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0306244-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0335423-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0335424-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0083216-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0083215-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0100595-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0306244-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0335423-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0335424-3-prime-utr Drosophila melanogaster

Interactions

Cytoscape Network Displayer

 

Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
41944 NCBI Entrez Gene identifiers FBgn0003507
66998 BioGRID FBgn0003507

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 4027.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 4142.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 124.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 2353.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 2377.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 2829.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 5069.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 3482.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 2041.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 2850.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 2746.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 1720.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 5648.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 4692.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 3812.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 2332.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 4545.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 210.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 3463.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 4423.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 3600.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 6083.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 3052.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 3645.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 3714.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 415.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 2049.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 3113.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1654.0
FBgn0003507 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1652.0

12 Introns

DB identifier
Organism . Name
intron_FBgn0003507:4_FBgn0003507:5 Drosophila melanogaster
intron_FBgn0003507:5_FBgn0003507:6 Drosophila melanogaster
intron_FBgn0003507:6_FBgn0003507:7 Drosophila melanogaster
intron_FBgn0003507:7_FBgn0003507:9 Drosophila melanogaster
intron_FBgn0003507:9_FBgn0003507:10 Drosophila melanogaster
intron_FBgn0003507:10_FBgn0003507:11 Drosophila melanogaster
intron_FBgn0003507:6_FBgn0003507:8 Drosophila melanogaster
intron_FBgn0003507:8_FBgn0003507:9 Drosophila melanogaster
intron_FBgn0003507:1_FBgn0003507:3 Drosophila melanogaster
intron_FBgn0003507:3_FBgn0003507:5 Drosophila melanogaster
intron_FBgn0003507:2_FBgn0003507:3 Drosophila melanogaster
intron_FBgn0003507:10_FBgn0003507:12 Drosophila melanogaster

37 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage srp none -0.294571553   19067489
Lipid storage srp none -0.345864406   19067489
Lipid storage srp none 1.805421923   19067489
Lipid storage srp none -0.18898781   19067489
E. coli / S. aureus infection srp Decreased phagocytosis np   11912489
L. monocytogenes infection srp Fewer infected cells ***   16157870
Constitutive protein secretion and Golgi organization (1) srp Decreased horseradish peroxidase protein expression sp   16452979
Cell size and cell-cycle regulation (1) srp none sp   16496002
Candida albicans phagocytosis (1) srp Decreased Candida albicans phagocytosis np   16336044
Candida albicans phagocytosis (2) srp Decreased Escherichia coli phagocytosis 32   16336044
Candida albicans phagocytosis (3) srp Decreased latex beads phagocytosis 26   16336044
Heart development and function srp Cardiac precursors specification defects, heart patterning defects np   14684833
Dendrite pattern formation srp none np   16547170
Mitosis srp Short spindle np   17412918
Lipid storage srp Normal/larger sized lipid droplets, highly condensed moderate   18408709
Combinatorial effect with methyl methanesulphonate (1) srp Synthetic lethal with methyl methanesulphonate sp   19543366
Combinatorial effect with methyl methanesulphonate (2) srp Synthetic lethal with methyl methanesulphonate sp   19543366
Mutant human huntingtin aggregation srp Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) srp none np   20220848
Heat nociception (1) srp none -0.74   21074052
Serratia marcescens infection (1) srp none -1.09876543209876   19520911
Serratia marcescens infection (1) srp none 0.643835616438356   19520911
Notch pathway regulation (4) srp Completely lethal (pupal) sp   19363474
PGN-induced dJNK phosphorylation srp Increased P-JNK protein expression with PGN 3.35 15 min PGN induction 19893628
Notch pathway regulation (1) srp Upregulation of Notch pathway np   20493818
Notch pathway regulation (2) srp none np C96-GAL4 20493818
Notch pathway regulation (2) srp Up- and downregulation of Notch pathway; adult wing veins: disrupted; adult wing posterior compartment: smaller, blister; wing disc NRE:EGFP: up, down; wing disc myrRFP: accumulation, reduced sp en-GAL4 20493818
Notch pathway regulation (3) srp none np   20493818
Adiposity regulation (1) srp Decreased triglyceride expression -0.579   20074523
Adiposity regulation (1) srp Decreased triglyceride expression 0.104   20074523

0 Submissions