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Gene : rst D. melanogaster

DB identifier  ? FBgn0003285 Secondary Identifier  ? CG4125
Name  ? roughest Source  FlyBase
  • synonyms:
  • CG4125,
  • CT13684,
  • rst-irreC,
  • Roughest,
  • IREE-C,
  • irrecC-rst,
  • Irre-C,
  • rst-irrecC,
  • FBgn0005381,
  • Irregular chiasm C-roughest protein,
  • Irregular optic chiasma C/Roughest,
  • IrreC,
  • irregular optic chiasma C,
  • ChiasmC-roughest,
  • rst/irrecC,
  • FBgn0003285,
  • IrrecC,
  • irreC-roughest,
  • Irregular chiasmC-roughest,
  • Rst/IrreC,
  • FBan0004125,
  • FBgn0001272,
  • irregular chiasm-C-roughest,
  • UB883,
  • IRREC/RST,
  • IrreC-Rst,
  • Irregular-chiasm-C,
  • irregular chiasm C-roughest,
  • Rst

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34 Alleles

DB identifier Symbol Allele Class Organism
FBal0195802 rst[DD1.Scer\UAS]   Drosophila melanogaster
FBal0284006 rst[Scer\UAS.T:SV5\V5]   Drosophila melanogaster
FBal0035520 rst[3-66]   Drosophila melanogaster
FBal0178158 rst[f07991]   Drosophila melanogaster
FBal0178159 rst[f01376]   Drosophila melanogaster
FBal0178160 rst[f01179]   Drosophila melanogaster
FBal0178161 rst[e03602]   Drosophila melanogaster
FBal0178162 rst[e01692]   Drosophila melanogaster
FBal0014800 rst[irreC1]   Drosophila melanogaster
FBal0243995 rst[dsRNA.Scer\UAS]   Drosophila melanogaster
FBal0243996 rst[Scer\UAS.cBa]   Drosophila melanogaster
FBal0192890 rst[MB01115]   Drosophila melanogaster
FBal0051200 rst[hs.PS]   Drosophila melanogaster
FBal0014797 rst[6] loss of function allele Drosophila melanogaster
FBal0014796 rst[5]   Drosophila melanogaster
FBal0127893 rst[hs.18ZDelta3.1]   Drosophila melanogaster
FBal0014795 rst[4]   Drosophila melanogaster
FBal0025338 rst[irreC2]   Drosophila melanogaster
FBal0014798 rst[7]   Drosophila melanogaster
FBal0014793 rst[1]   Drosophila melanogaster
FBal0014799 rst[8]   Drosophila melanogaster
FBal0175529 rst[MtnA.PG]   Drosophila melanogaster
FBal0063795 rst[2]   Drosophila melanogaster
FBal0127894 rst[MtnA.PS]   Drosophila melanogaster
FBal0088671 rst[unspecified]   Drosophila melanogaster
FBal0046384 rst[D] gain of function allele Drosophila melanogaster
FBal0051201 rst[Scer\UAS.cSa]   Drosophila melanogaster
FBal0263970 rst[MI03241]   Drosophila melanogaster
FBal0239587 rst[JF03087]   Drosophila melanogaster
FBal0267882 rst[MI04842]   Drosophila melanogaster

101 Clones

Secondary Identifier DB identifier
RP004106850 FBcl0483294
CK02627 FBcl0058923
EK146935 FBcl0059970
EK048338 FBcl0060064
EK231913 FBcl0060320
EK296132 FBcl0060546
EK166404 FBcl0060558
EK050106 FBcl0060588
EK159106 FBcl0060612
EK123556 FBcl0060624
CK845775 FBcl0060638
EK155919 FBcl0060646
EK222060 FBcl0060728
EK215211 FBcl0060754
EK151825 FBcl0060816
EK230932 FBcl0060830
EK087949 FBcl0060902
EK144127 FBcl0060930
EK216652 FBcl0061018
EP16043 FBcl0074225
EP00915 FBcl0074233
LP06464 FBcl0187369
RE62316 FBcl0222495
RE57931 FBcl0222497
RE01586 FBcl0222513
RE07595 FBcl0222515
RE62916 FBcl0222517
RE15264 FBcl0222520
RE53428 FBcl0222526
RE07526 FBcl0222530

9 Exons

DB identifier Symbol
FBgn0003285:9 rst:9
FBgn0003285:8 rst:8
FBgn0003285:7 rst:7
FBgn0003285:6 rst:6
FBgn0003285:5 rst:5
FBgn0003285:4 rst:4
FBgn0003285:3 rst:3
FBgn0003285:2 rst:2
FBgn0003285:1 rst:1

2 Transcripts

DB identifier Gene
FBtr0343758 rst
FBtr0070562 rst

4 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0070562-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0343758-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0070562-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0343758-3-prime-utr Drosophila melanogaster

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0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
31290 NCBI Entrez Gene identifiers FBgn0003285
57820 BioGRID FBgn0003285

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 458.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 231.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 2031.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1596.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 648.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 154.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 339.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 168.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 73.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 311.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 211.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 502.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 2583.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1549.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 2227.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 339.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 4461.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 166.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 2632.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 274.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 5409.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 142.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 452.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 111.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 123.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 143.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 266.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1051.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1021.0
FBgn0003285 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1295.0

8 Introns

DB identifier
Organism . Name
intron_FBgn0003285:9_FBgn0003285:8 Drosophila melanogaster
intron_FBgn0003285:8_FBgn0003285:7 Drosophila melanogaster
intron_FBgn0003285:7_FBgn0003285:6 Drosophila melanogaster
intron_FBgn0003285:6_FBgn0003285:5 Drosophila melanogaster
intron_FBgn0003285:5_FBgn0003285:4 Drosophila melanogaster
intron_FBgn0003285:4_FBgn0003285:3 Drosophila melanogaster
intron_FBgn0003285:3_FBgn0003285:1 Drosophila melanogaster
intron_FBgn0003285:3_FBgn0003285:2 Drosophila melanogaster

24 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage rst none 2.583225893   19067489
Lipid storage rst none -1.143380158   19067489
Lipid storage rst none 1.141774969   19067489
Lipid storage rst none 0.513749985   19067489
Cell size and cell-cycle regulation (1) rst none sp   16496002
Mutant human huntingtin aggregation rst Decreased mutant human huntingtin aggregation <= -2   19789644
Muscle morphogenesis and function (1) rst none np   20220848
Muscle morphogenesis and function (1) rst none np   20220848
Muscle morphogenesis and function (1) rst none np   20220848
Heat nociception (1) rst none -0.31   21074052
Heat nociception (1) rst none 0   21074052
Heat nociception (1) rst none -0.79   21074052
Heart development and function (1) rst none 1   20371351
Heart development and function (1) rst none 1   20371351
Heart development and function (1) rst none 1   20371351
Serratia marcescens infection (1) rst none -0.616438356164383   19520911
Serratia marcescens infection (1) rst none -0.5   19520911
Notch pathway regulation (4) rst none 0   19363474
Notch pathway regulation (4) rst Gain of bristles, loss of bristles, lateral inhibition sp   19363474
Notch pathway regulation (4) rst none 0   19363474
Notch pathway regulation (5) rst none np   19363474
Adiposity regulation (1) rst none -0.323   20074523
Adiposity regulation (1) rst none 0.042   20074523
Hippo pathway regulation rst none 0.37   23263283

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