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Gene : lds D. melanogaster

DB identifier  ? FBgn0002542 Secondary Identifier  ? CG2684
Name  ? lodestar Source  FlyBase
  • synonyms:
  • Female sterile (3) Horka,
  • DmF2,
  • Lds,
  • Negative transcription elongation factor 2,
  • transcript A,
  • lod,
  • early-5,
  • Fs(3)Sz11,
  • FBgn0002542,
  • CG2684,
  • FBgn0019956,
  • early-3,
  • FBan0002684,
  • early-B,
  • NTef2,
  • Horka,
  • Fs(3)Horka,
  • factor 2,
  • FBgn0037532,
  • FBgn0001050,
  • early,
  • Fs(3)Hor

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29 Alleles

DB identifier Symbol Allele Class Organism
FBal0277684 lds[Hor-D.Scer\UAS.T:Avic\GFP-CFP]   Drosophila melanogaster
FBal0179064 lds[e00889]   Drosophila melanogaster
FBal0159006 lds[A190]   Drosophila melanogaster
FBal0035191 lds[+tA]   Drosophila melanogaster
FBal0011609 lds[2]   Drosophila melanogaster
FBal0032085 lds[352-16]   Drosophila melanogaster
FBal0086419 lds[unspecified]   Drosophila melanogaster
FBal0011608 lds[1]   Drosophila melanogaster
FBal0011611 lds[4]   Drosophila melanogaster
FBal0011610 lds[3]   Drosophila melanogaster
FBal0061068 lds[079-2]   Drosophila melanogaster
FBal0263299 lds[HMS01389]   Drosophila melanogaster
FBal0209912 lds[GD4508]   Drosophila melanogaster
FBal0004758 lds[Hor-D] antimorphic allele - genetic evidence, gain of function allele Drosophila melanogaster
FBal0247454 lds[hor-rvE1]   Drosophila melanogaster
FBal0247455 lds[hor-rvP1]   Drosophila melanogaster
FBal0247456 lds[hor-rvP2] loss of function allele Drosophila melanogaster
FBal0247457 lds[hor-rvP3]   Drosophila melanogaster
FBal0247458 lds[hor-rvP4]   Drosophila melanogaster
FBal0247459 lds[hor-rvP5]   Drosophila melanogaster
FBal0247460 lds[hor-rvP6]   Drosophila melanogaster
FBal0247461 lds[hor-rvP7]   Drosophila melanogaster
FBal0247462 lds[hor-rvP8]   Drosophila melanogaster
FBal0247463 lds[hor-rvP9]   Drosophila melanogaster
FBal0247464 lds[t5.1]   Drosophila melanogaster
FBal0247465 lds[HD5.1]   Drosophila melanogaster
FBal0247466 lds[HD5.5]   Drosophila melanogaster
FBal0222044 lds[5-HA-1872]   Drosophila melanogaster
FBal0273170 lds[NIG.2684R]   Drosophila melanogaster

17 Clones

Secondary Identifier DB identifier
FI21104 FBcl0743428
UUGC0485 FBcl0004143
EK181627 FBcl0012484
EK091648 FBcl0012504
EK269105 FBcl0012524
EK306806 FBcl0012544
EK223453 FBcl0013076
EC03325 FBcl0073553
EC30646 FBcl0073555
EP04551 FBcl0090105
LD15750 FBcl0153404
LD15752 FBcl0153405
RE70645 FBcl0200616
RE74565 FBcl0201758
SD04967 FBcl0281060
Dmel_neb_011655_0908_2096 FBcl0368093
FGM237A11 FBcl0392030

5 Exons

DB identifier Symbol
FBgn0002542:1 lds:1
FBgn0002542:2 lds:2
FBgn0002542:3 lds:3
FBgn0002542:4 lds:4
FBgn0002542:5 lds:5

1 Transcripts

DB identifier Gene
FBtr0081758 lds

2 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0081758-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0081758-3-prime-utr Drosophila melanogaster

Interactions

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Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
45894 NCBI Entrez Gene identifiers FBgn0002542
69962 BioGRID FBgn0002542

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 983.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 1366.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 1006.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 1061.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 1329.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 824.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 1038.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 1269.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 638.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1316.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 885.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 665.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 1019.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 1144.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 1230.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 966.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 834.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1197.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 1278.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 953.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 1048.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1354.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 1158.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1005.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 912.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 3053.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 579.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1299.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1080.0
FBgn0002542 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 762.0

4 Introns

DB identifier
Organism . Name
intron_FBgn0002542:1_FBgn0002542:2 Drosophila melanogaster
intron_FBgn0002542:2_FBgn0002542:3 Drosophila melanogaster
intron_FBgn0002542:3_FBgn0002542:4 Drosophila melanogaster
intron_FBgn0002542:4_FBgn0002542:5 Drosophila melanogaster

14 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage lds none -1.751356515   19067489
Lipid storage lds none -0.869374755   19067489
Cell size and cell-cycle regulation (1) lds none sp   16496002
Dendrite pattern formation lds none np   16547170
Microtubule assembly and organization lds none np   18463163
Muscle morphogenesis and function (1) lds none np   20220848
Heat nociception (1) lds none 0.33   21074052
Heart development and function (1) lds none 1   20371351
Serratia marcescens infection (1) lds none -1.43548387096774   19520911
Notch pathway regulation (4) lds Bristle morphology defects, notum malformation death sp   19363474
Notch pathway regulation (4) lds Completely lethal (pupal) sp   19363474
Adiposity regulation (1) lds none -0.348   20074523
Hippo pathway regulation lds none -0.81   23263283
Glycosylation regulation (1) lds none sp   21203496

0 Submissions