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Gene : Cg25C D. melanogaster

DB identifier  ? FBgn0000299 Secondary Identifier  ? CG4145
Name  ? Collagen type IV Source  FlyBase
  • synonyms:
  • collagen,
  • Coll IV,
  • alpha(IV)1/Cg25C,
  • alpha1,
  • CG4145,
  • CG25C,
  • DCg1,
  • Type IV collagen,
  • CT12803,
  • preprocollagen alpha1(IV),
  • FBgn0000299,
  • Dcg,
  • FBan0004145,
  • col4a1,
  • Laminin alpha3,5,
  • type IV collagen, alpha-chain,
  • Collagen IV,
  • collagenIV a1,
  • Coll,
  • Cgc25,
  • gp125,
  • Cgc25C,
  • collagen type IV

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49 Alleles

DB identifier Symbol Allele Class Organism
FBal0267066 Cg25C[TARG.T:Disc\RFP-DsRed2]   Drosophila melanogaster
FBal0267067 Cg25C[T:Disc\RFP-DsRed2]   Drosophila melanogaster
FBal0184346 Cg25C[EY15460]   Drosophila melanogaster
FBal0055188 Cg25C[A109.1F2]   Drosophila melanogaster
FBal0044702 Cg25C[k13420]   Drosophila melanogaster
FBal0065309 Cg25C[k16812]   Drosophila melanogaster
FBal0065310 Cg25C[k09824]   Drosophila melanogaster
FBal0065311 Cg25C[k03102]   Drosophila melanogaster
FBal0065312 Cg25C[k03009]   Drosophila melanogaster
FBal0065313 Cg25C[k00405]   Drosophila melanogaster
FBal0065318 Cg25C[04518a]   Drosophila melanogaster
FBal0008306 Cg25C[DCS-L11]   Drosophila melanogaster
FBal0008311 Cg25C[DCS-L16]   Drosophila melanogaster
FBal0008315 Cg25C[DCS-L20]   Drosophila melanogaster
FBal0008318 Cg25C[DCS-L23]   Drosophila melanogaster
FBal0008285 Cg25C[DTS-L2]   Drosophila melanogaster
FBal0008286 Cg25C[DTS-L3]   Drosophila melanogaster
FBal0008287 Cg25C[DTS-L4]   Drosophila melanogaster
FBal0008288 Cg25C[DTS-L5]   Drosophila melanogaster
FBal0008290 Cg25C[DTS-L10]   Drosophila melanogaster
FBal0008291 Cg25C[DTS-L11]   Drosophila melanogaster
FBal0008292 Cg25C[DTS-L12]   Drosophila melanogaster
FBal0008293 Cg25C[DTS-L13]   Drosophila melanogaster
FBal0008294 Cg25C[DTS-L14]   Drosophila melanogaster
FBal0008295 Cg25C[DTS-L16]   Drosophila melanogaster
FBal0008319 Cg25C[a-30]   Drosophila melanogaster
FBal0008320 Cg25C[b-9]   Drosophila melanogaster
FBal0008322 Cg25C[b-17]   Drosophila melanogaster
FBal0267182 Cg25C[h-13]   Drosophila melanogaster
FBal0008327 Cg25C[h-30]   Drosophila melanogaster

55 Clones

Secondary Identifier DB identifier
EK034933 FBcl0033806
EK176545 FBcl0033890
EK100442 FBcl0033898
EK169004 FBcl0033930
EK061158 FBcl0033960
EK188338 FBcl0034062
EK284733 FBcl0034072
EK056450 FBcl0034078
EK296463 FBcl0033070
EK246812 FBcl0033078
EK191950 FBcl0033090
EK046560 FBcl0033100
EK107664 FBcl0033110
EK280741 FBcl0033116
EK163747 FBcl0033136
EK156745 FBcl0033146
EK166101 FBcl0033166
EK143821 FBcl0033416
AT14586 FBcl0041379
AT17615 FBcl0041433
CK00494 FBcl0060511
EC39903 FBcl0072445
GH01789 FBcl0131801
GM04010 FBcl0143474
GM01993 FBcl0143476
GM01992 FBcl0143477
GM02187 FBcl0143478
GM24679 FBcl0148163
GM32120 FBcl0148164
HL03560 FBcl0150478

13 Exons

DB identifier Symbol
FBgn0000299:3 Cg25C:3
FBgn0000299:4 Cg25C:4
FBgn0000299:5 Cg25C:5
FBgn0000299:6 Cg25C:6
FBgn0000299:7 Cg25C:7
FBgn0000299:8 Cg25C:8
FBgn0000299:9 Cg25C:9
FBgn0000299:10 Cg25C:10
FBgn0000299:11 Cg25C:11
FBgn0000299:1 Cg25C:1
FBgn0000299:13 Cg25C:13
FBgn0000299:2 Cg25C:2
FBgn0000299:12 Cg25C:12

3 Transcripts

DB identifier Gene
FBtr0079001 Cg25C
FBtr0079002 Cg25C
FBtr0079003 Cg25C

6 UTRs

Class DB identifier
Organism . Name
FivePrimeUTR FBtr0079001-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0079002-5-prime-utr Drosophila melanogaster
FivePrimeUTR FBtr0079003-5-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0079001-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0079002-3-prime-utr Drosophila melanogaster
ThreePrimeUTR FBtr0079003-3-prime-utr Drosophila melanogaster

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Other

0 Pathways

2 Cross References

Identifier
Source . Name

Subject . Primary Identifier
33727 NCBI Entrez Gene identifiers FBgn0000299
59908 BioGRID FBgn0000299

11 Data Sets

Name URL
FlyBase data set for Drosophila melanogaster  
Swiss-Prot data set http://ca.expasy.org/sprot
Drosophila 12 Genomes Consortium homology  
GenomeRNAi data set  
TreeFam data set  
Panther data set  
IntAct interactions data set  
BioGRID interaction data set http://www.thebiogrid.org/downloads.php
GO Annotation from FlyBase  
FlyBase fasta data set for Drosophila melanogaster  
Drosophila Cell Line and Developmental Stage Gene and Exon Scores  

55 Expression Scores


Gene . Primary Identifier

Submission . Title

Cell Line . Name

Developmental Stage . Name
Score
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME L1 11769.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Sg4 4734.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD11 9347.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c2 12421.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD20-c5 3414.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Kc167 2145.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores GM2 3480.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2-DRSC 12458.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S2R+ 947.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S1 1170.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores 1182-4H 4231.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD16-c3 4424.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD32 13678.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD17-c3 708.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD8 7717.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W1 Cl.8+ 5169.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD9 5952.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG1-c1 1146.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD21 3274.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmD4-c1 9748.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG3-c2 7355.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores S3 1230.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores CME W2 2444.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores mbn2 1516.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores ML-DmBG2-c2 2381.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 0-2 h 1679.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 2-4 h 1375.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 4-6 h 1679.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores Embryo 6-8 h 1117.0
FBgn0000299 Drosophila Cell Line and Developmental Stage Gene and Exon Scores emb 8-10h 1146.0

12 Introns

DB identifier
Organism . Name
intron_FBgn0000299:3_FBgn0000299:4 Drosophila melanogaster
intron_FBgn0000299:4_FBgn0000299:5 Drosophila melanogaster
intron_FBgn0000299:5_FBgn0000299:6 Drosophila melanogaster
intron_FBgn0000299:6_FBgn0000299:7 Drosophila melanogaster
intron_FBgn0000299:7_FBgn0000299:8 Drosophila melanogaster
intron_FBgn0000299:8_FBgn0000299:9 Drosophila melanogaster
intron_FBgn0000299:9_FBgn0000299:10 Drosophila melanogaster
intron_FBgn0000299:10_FBgn0000299:11 Drosophila melanogaster
intron_FBgn0000299:1_FBgn0000299:4 Drosophila melanogaster
intron_FBgn0000299:10_FBgn0000299:13 Drosophila melanogaster
intron_FBgn0000299:2_FBgn0000299:4 Drosophila melanogaster
intron_FBgn0000299:10_FBgn0000299:12 Drosophila melanogaster

25 RNAi Results

Screen Gene Phenotype Score Conditions PubMed ID
Lipid storage Cg25C none 0.09715496   19067489
Lipid storage Cg25C none -0.074975943   19067489
Cell size and cell-cycle regulation (1) Cg25C none sp   16496002
Cell size and cell-cycle regulation (1) Cg25C none sp   16496002
Muscle morphogenesis and function (1) Cg25C Lethal np   20220848
Muscle morphogenesis and function (1) Cg25C Lethal np   20220848
Muscle morphogenesis and function (2) Cg25C Wing posture / locomotion / ability to fly defect or lethal / semi-lethal np   20220848
Muscle morphogenesis and function (3) Cg25C none np   20220848
Heat nociception (1) Cg25C none -1.17   21074052
Heart development and function (1) Cg25C none 1   20371351
Serratia marcescens infection (1) Cg25C none 0.287671232876712   19520911
Serratia marcescens infection (1) Cg25C none 0.234567901234567   19520911
Notch pathway regulation (4) Cg25C none 0   19363474
Notch pathway regulation (4) Cg25C none 0   19363474
Notch pathway regulation (4) Cg25C Completely lethal (pupal) sp   19363474
Notch pathway regulation (1) Cg25C Upregulation of Notch pathway np   20493818
Notch pathway regulation (2) Cg25C none np en-GAL4 20493818
Notch pathway regulation (3) Cg25C none np   20493818
Adiposity regulation (1) Cg25C none -0.53   20074523
Adiposity regulation (1) Cg25C none 0.315   20074523
RTK-Ras-ERK pathway regulation (1) Cg25C Increased ERK phosphorylation after EGF stimulation 1.53 0 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (1) Cg25C none 0.26 10 minutes EGF stimulation 22028469
RTK-Ras-ERK pathway regulation (2) Cg25C none -0.41 30 minutes sSpitz stimulation 22028469
RTK-Ras-ERK pathway regulation (2) Cg25C none -0.36 10 minutes sSpitz stimulation 22028469
Hippo pathway regulation Cg25C none 0.17   23263283

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