modENCODE |  Help |  blog
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Transcriptional profiling of C. elegans Developmental Stages using RNA-seq

experiment: Transcriptional profiling of C. elegans Developmental Stages using RNA-seq project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages and strains of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.
There are 27 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_6538

'Celegans Dev Timecourse Expression EmMalesHIM8 RNA-seq sequences and alignment' Embryo him-8(e1489) 20dC [ALL]
CB4689 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR027904
SRA: SRR027905
SRA: SRR089797
SRA: SRR125491


8 files Download data files
modENCODE_6537

'Celegans Dev Timecourse Expression EE RNA-seq sequences and alignment' early Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR016669
SRA: SRR016670
SRA: SRR016671
SRA: SRR016672
SRA: SRR016673
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_6536

'Celegans Dev Timecourse Expression DauerExitDAF2 RNA-seq sequences and alignment' dauer exit daf-2(e1370) 25dC 91hrs 15dC 12hrs [ALL]
CB1370 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR027191
SRA: SRR027192
SRA: SRR089798
SRA: SRR358683
SRA: SRR358684
...All entries in public repositories generated by this submission



16 files Download data files
modENCODE_6535

'Celegans Dev Timecourse Expression DauerEntryDAF2 RNA-seq sequences and alignment' dauer entry daf-2(el370) 25dC 48 hrs post-L1 stage larvae [ALL]
CB1370 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR027189
SRA: SRR027190
SRA: SRR124275
SRA: SRR124276
SRA: SRR358688
...All entries in public repositories generated by this submission



16 files Download data files
modENCODE_6534

'Celegans Dev Timecourse Expression DauerDAF2 RNA-seq sequences and alignment' dauer daf-2(el370) 25dC 91hrs post-L1 stage larvae [ALL]
CB1370 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR027187
SRA: SRR027188
SRA: SRR360120
SRA: SRR360121
SRA: SRR360122
...All entries in public repositories generated by this submission



16 files Download data files
modENCODE_6533

Celegans Dev Timecourse Expression AdultSPE9 RNA-seq sequences and alignment Adult spe-9(hc88) 23dC 8 days post-L4 molt [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired SRA: SRR023534
SRA: SRR023535
SRA: SRR023536
SRA: SRR023537


4 files Download data files
modENCODE_6545

'Celegans Dev Timecourse Expression L4MALE6cap2 RNA-seq sequences and alignment' Male larva mid-L4 25dC 30 hrs post-L1 stage larvae [ALL]
CB4689 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR137926
SRA: SRR139148


4 files Download data files
modENCODE_6546

'Celegans Dev Timecourse Expression LE RNA-seq sequences and alignment' late Embryo 20dC 4.5 hours post-early embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR016674
SRA: SRR016675
SRA: SRR016676
SRA: SRR016677
SRA: SRR016678
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_6544

'Celegans Dev Timecourse Expression L4MALE RNA-seq sequences and alignment' Male larva mid-L4 25dC 30 hrs post-L1 stage larvae [ALL]
CB4689 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR016684
SRA: SRR016685
SRA: SRR016686
SRA: SRR124273
SRA: SRR124274


8 files Download data files
modENCODE_6543

'Celegans Dev Timecourse Expression L4 RNA-seq sequences and alignment' mid-L4 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR006517
SRA: SRR006518
SRA: SRR023579
SRA: SRR023580
SRA: SRR023581


8 files Download data files
modENCODE_6542

'Celegans Dev Timecourse Expression L3 RNA-seq sequences and alignment' mid-L3 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR006519
SRA: SRR006520
SRA: SRR089405
SRA: SRR089406
SRA: SRR089407


8 files Download data files
modENCODE_6541

'Celegans Dev Timecourse Expression L2 RNA-seq sequences and alignment' mid-L2 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR006511
SRA: SRR006512
SRA: SRR006513
SRA: SRR125337
SRA: SRR125338
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_6540

'Celegans Dev Timecourse Expression L1LIN35-1cap1 RNA-seq sequences and alignment' lin-35(n745) larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
MT10430 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR137925
SRA: SRR139094


4 files Download data files
modENCODE_6539

'Celegans Dev Timecourse Expression L1 RNA-seq sequences and alignment' larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR016679
SRA: SRR016680
SRA: SRR016681
SRA: SRR016683
SRA: SRR089821
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_6553

'Celegans Dev Timecourse Expression N2 L2 RZ-53 RNA-seq sequences and alignment' mid-L2 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR493362
SRA: SRR493363
SRA: SRR493364
SRA: SRR493365
SRA: SRR578144


4 files Download data files
modENCODE_6552

'Celegans Dev Timecourse Expression N2 L2 DSN-50 RNA-seq sequences and alignment' mid-L2 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR504324
SRA: SRR504325


4 files Download data files
modENCODE_6556

'Celegans Dev Timecourse Expression N2 LE-2cap6 RNA-seq sequences and alignment' late Embryo 20dC 4.5 hours post-early embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR136599


4 files Download data files
modENCODE_6554

'Celegans Dev Timecourse Expression N2 L4cap4 RNA-seq sequences and alignment' mid-L4 stage larvae [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR136597


4 files Download data files
modENCODE_6550

'Celegans Dev Timecourse Expression N2 EE DSN-51 RNA-seq sequences and alignment' early Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR493105
SRA: SRR554453


4 files Download data files
modENCODE_6551

'Celegans Dev Timecourse Expression N2 EE RZ-54 RNA-seq sequences and alignment' early Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR493358
SRA: SRR493359
SRA: SRR493360
SRA: SRR493361
SRA: SRR578143


4 files Download data files
modENCODE_6549

'Celegans Dev Timecourse Expression N2 4cell EE RZ-56 RNA-seq sequences and alignment' 4 cell stage Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR493099
SRA: SRR493100


4 files Download data files
modENCODE_6547

'Celegans Dev Timecourse Expression LIN35 RNA-seq sequences and alignment' lin-35(n745) larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
MT10430 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR016688
SRA: SRR016689
SRA: SRR016690
SRA: SRR016691


4 files Download data files
modENCODE_6548

'Celegans Dev Timecourse Expression N2 4cell EE DSN-Negative-Positive RNA-seq sequences and alignment' 4 cell stage Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR316754
SRA: SRR316755
SRA: SRR316756


5 files Download data files
modENCODE_6559

'Celegans Dev Timecourse Expression N2-EEcap5 RNA-seq sequences and alignment' early Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR089795
SRA: SRR089796


4 files Download data files
modENCODE_6560

'Celegans Dev Timecourse Expression YA RNA-seq sequences and alignment' Young Adult [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR006514
SRA: SRR006515
SRA: SRR006516
SRA: SRR125481
SRA: SRR125482


8 files Download data files
modENCODE_6557

'Celegans Dev Timecourse Expression N2 YA RZ-1 RNA-seq sequences and alignment' Young Adult [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR360126
SRA: SRR360127
SRA: SRR360128
SRA: SRR360129
SRA: SRR360130
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_6558

'Celegans Dev Timecourse Expression N2 Yad-1RR RNA-seq sequences and alignment' Young Adult [ALL]
N2 [ALL]
25 degree celsius [ALL]
embargo expired SRA: SRR360132
SRA: SRR360133
SRA: SRR360134


4 files Download data files