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Transcriptional Profiling of additional Drosophila species with RNA-Seq

experiment: Transcriptional Profiling of additional Drosophila species with RNA-Seq project: Comparative Genomics PI: Brian Oliver Labs: Brian Oliver
To provide biological validation of D. melanogaster transcript models, we will generate RNA-Seq profiles for other members of the genus, using timepoints and tissue samples matching those being generated for D. melanogaster. Evolutionary conservation of expression will be valuable support for annotation efforts.
There are 27 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_4054

 Dsim 0251.199 Testes RNA-seq alignments Dsim Adult Male Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
Dsim virgin male testes and reproductive system [ALL]
embargo expired GEO: GSM775508
GEO: GSM775509
GEO: GSM775510
SRA: SRR330571
SRA: SRR330572
...All entries in public repositories generated by this submission



3 files Download data files
modENCODE_3615

 D. yakuba female RNA-seq Dyak Adult Female Whole Species [ALL]
D. yakuba 14021-0261.01 [ALL]
embargo expired GEO: GSM694271
GEO: GSM694272
SRA: SRR166820
SRA: SRR166821


2 files Download data files
modENCODE_4053

 Dsim 0251.199 Ovaries RNA-seq alignments Dsim Adult Female Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
Dsim virgin female ovaries and reproductive system [ALL]
embargo expired GEO: GSM775506
GEO: GSM775507
SRA: SRR330569
SRA: SRR330570


2 files Download data files
modENCODE_3617

 D. ananassae female RNA-seq Dana Adult Female Whole Species [ALL]
D. ananassae 14024-0371.13 [ALL]
embargo expired GEO: GSM694275
GEO: GSM694276
SRA: SRR166824
SRA: SRR166825


2 files Download data files
modENCODE_3613

 D. virilis female RNA-seq Dvir Adult Female Whole Species [ALL]
D. virilis 15010-1051.87 [ALL]
embargo expired GEO: GSM694287
GEO: GSM694288
SRA: SRR166836
SRA: SRR166837


2 files Download data files
modENCODE_2980


Related to: modENCODE_4056

 D. pseudoobscura female heads mRNA-seq revised Adult Female 8 days [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Female heads [ALL]
embargo expired GEO: GSM499403


20 files Download data files
modENCODE_3621

 D. pseudoobscura female RNA-seq Dpse Adult Female Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
embargo expired GEO: GSM694279
GEO: GSM694280
SRA: SRR166828
SRA: SRR166829


2 files Download data files
modENCODE_3085


Related to: modENCODE_4056

 D. pseudoobscura male heads mRNA-seq revised Adult Male 8 days [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Male heads [ALL]
embargo expired GEO: GSM499404


20 files Download data files
modENCODE_3622

 D. simulans w501 female RNAseq Dsim Adult Female Whole Species [ALL]
D. simulans 14021-0251.011 [ALL]
embargo expired GEO: GSM694266
GEO: GSM694267
SRA: SRR166815
SRA: SRR166816


2 files Download data files
modENCODE_3084


Related to: modENCODE_4056

 D. melanogaster male heads mRNA-seq Adult male 8 days [ALL]
Oregon-R-modENCODE [ALL]
Male heads [ALL]
embargo expired GEO: GSM509822
GEO: GSM515637


20 files Download data files
modENCODE_3623

 D. simulans w501 male RNAseq Dsim Adult Male Whole Species [ALL]
D. simulans 14021-0251.011 [ALL]
embargo expired GEO: GSM694268
GEO: GSM694269
SRA: SRR166817
SRA: SRR166818


2 files Download data files
modENCODE_3631

 D. melanogaster y1w67c23 female RNA-seq revised Dmel Adult Female Whole Species [ALL]
D. melanogaster y1w67c [ALL]
embargo expired GEO: GSM694258
GEO: GSM694259
SRA: SRR166807
SRA: SRR166808


2 files Download data files
modENCODE_3620

 D. pseudoobscura whole male RNA-seq Dpse Adult Male Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
embargo expired GEO: GSM694281
GEO: GSM694282
SRA: SRR166830
SRA: SRR166831


2 files Download data files
modENCODE_3083


Related to: modENCODE_4056

 D. melanogaster female heads mRNA-seq Adult Female 8 days [ALL]
Oregon-R-modENCODE [ALL]
Female Heads [ALL]
embargo expired GEO: GSM509821
GEO: GSM515636


20 files Download data files
modENCODE_3608

 D. simulans wildtype male RNA-seq Dsim Adult Male Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
embargo expired GEO: GSM694264
GEO: GSM694265
SRA: SRR166813
SRA: SRR166814


2 files Download data files
modENCODE_4047

 Dpse 0121.94 Female Carcass RNA-seq alignments Dpse Adult Female Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Dpse virgin female carcass minus reproductive system [ALL]
embargo expired GEO: GSM775494
GEO: GSM775495
SRA: SRR330557
SRA: SRR330558


2 files Download data files
modENCODE_4048

 Dpse 0121.94 Male Carcass RNA-seq alignments Dpse Adult Female Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Dpse carcass minus reproductive system [ALL]
embargo expired GEO: GSM775496
GEO: GSM775497
SRA: SRR330559
SRA: SRR330560


2 files Download data files
modENCODE_3087


Related to: modENCODE_4056

 D. mojavensis female heads mRNA-seq Adult Female 8 days [ALL]
D. mojavensis wrigleyi 15081-1352.22 [ALL]
Female Heads [ALL]
embargo expired GEO: GSM522266
GEO: GSM522267


22 files Download data files
modENCODE_3086


Related to: modENCODE_4056

 D. mojavensis male heads mRNA-seq Adult Male 8 days [ALL]
D. mojavensis wrigleyi 15081-1352.22 [ALL]
Male Heads [ALL]
embargo expired GEO: GSM522268
GEO: GSM522269


22 files Download data files
modENCODE_3632

 D. melanogaster y1w67c23 male RNA-seq revised Dmel Adult Male Whole Species [ALL]
D. melanogaster y1w67c [ALL]
embargo expired GEO: GSM694260
GEO: GSM694261
SRA: SRR166809
SRA: SRR166810


2 files Download data files
modENCODE_3611

 D. mojavensis female RNA-seq Dmoj Adult Female Whole Species [ALL]
D. mojavensis wrigleyi 15081-1352.22 [ALL]
embargo expired GEO: GSM694283
GEO: GSM694284
SRA: SRR166832
SRA: SRR166833


2 files Download data files
modENCODE_4051

 Dsim 0251.199 Female Carcass RNA-seq alignments Dsim Adult Female Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
Dsim virgin female carcass minus reproductive system [ALL]
embargo expired GEO: GSM775502
GEO: GSM775503
SRA: SRR330565
SRA: SRR330566


2 files Download data files
modENCODE_4052

 Dsim 0251.199 Male Carcass RNA-seq alignments Dsim Adult Male Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
Dsim male carcass minus reproductive system [ALL]
embargo expired GEO: GSM775504
GEO: GSM775505
SRA: SRR330567
SRA: SRR330568


2 files Download data files
modENCODE_3610

 D. mojavensis male RNA-seq Dmoj Adult Male Whole Species [ALL]
D. mojavensis wrigleyi 15081-1352.22 [ALL]
embargo expired GEO: GSM694285
GEO: GSM694286
SRA: SRR166834
SRA: SRR166835


2 files Download data files
modENCODE_3609

 D. simulans wildtype female RNA-seq Dsim Adult Female Whole Species [ALL]
D. simulans 14021-0251.198 [ALL]
embargo expired GEO: GSM694262
GEO: GSM694263
SRA: SRR166811
SRA: SRR166812


2 files Download data files
modENCODE_4049

 Dpse 0121.94 Ovaries RNA-seq alignments Dpse Adult Female Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Dpse virgin female ovary and reproductive system [ALL]
embargo expired GEO: GSM775498
GEO: GSM775499
SRA: SRR330561
SRA: SRR330562


2 files Download data files
modENCODE_4050

 Dpse 0121.94 Testes RNA-seq alignments Dpse Adult Female Whole Species [ALL]
D. pseudoobscura 14011-0121.94 [ALL]
Dpse virgin male testes and reproductive system [ALL]
embargo expired GEO: GSM775500
GEO: GSM775501
SRA: SRR330563
SRA: SRR330564


2 files Download data files




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