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Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq TopHat analysis

experiment: Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq TopHat analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley, Sue Celniker
RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster cell lines. Reads were sequenced on Illumina GAIIx were aligned to the D. melanogaster r5 genome using TopHat.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 22 Computational annotation submissions for this experiment:
DCC id Name cell line Embargoed until Features, GBrowse and Data Files
modENCODE_5956


Related to: modENCODE_555
modENCODE_5952

Kc167 unstranded RNA-seq multiply aligned reads Kc167 [ALL]
embargo expired
GBrowse tracks: KC167_5956_hits.DCCheader.sam.gz.bam.sorted


1 files Download data files
modENCODE_4430


Related to: modENCODE_555
modENCODE_4409

Dm Cell Line Expression stranded RNA-seq S2-R+ multiply mapping reads S2R+ [ALL]
embargo expired
GBrowse tracks: S2Rplus.sub_4430.bam


1 files Download data files
modENCODE_4423


Related to: modENCODE_555
modENCODE_4402

Dm Cell Line Expression stranded RNA-seq ML-DmD20-c5 multiply mapping reads ML-DmD20-c5 [ALL]
embargo expired
GBrowse tracks: ML-DMD20-c5.sub_4423.bam


1 files Download data files
modENCODE_5958


Related to: modENCODE_555
modENCODE_5954

ML-DmBG3-c2 unstranded RNA-seq multiply aligned reads ML-DmBG3-c2 [ALL]
embargo expired
GBrowse tracks: ML_5958_hits.DCCheader.sam.gz.bam.sorted


1 files Download data files
modENCODE_4429


Related to: modENCODE_555
modENCODE_4408

Dm Cell Line Expression stranded RNA-seq S1 multiply mapping reads S1 [ALL]
embargo expired
GBrowse tracks: S1.sub_4429.bam


1 files Download data files
modENCODE_4424


Related to: modENCODE_555
modENCODE_4403

Dm Cell Line Expression stranded RNA-seq ML-DmD21 multiply mapping reads ML-DmD21 [ALL]
embargo expired
GBrowse tracks: ML-DmD21.sub_4424.bam


1 files Download data files
modENCODE_5957


Related to: modENCODE_555
modENCODE_5953

S2-DRSC unstranded RNA-seq multiply aligned reads S2-DRSC [ALL]
embargo expired
GBrowse tracks: S2_5957_hits.DCCheader.sam.gz.bam.sorted


1 files Download data files
modENCODE_4418


Related to: modENCODE_555
modENCODE_4397

Dm Cell Line Expression stranded RNA-seq ML-DmBG1-c1 multiply mapping reads ML-DmD17-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmBG1-c1.sub_4418.bam


1 files Download data files
modENCODE_5959


Related to: modENCODE_555
modENCODE_5955

CME W1 Cl.8+ unstranded RNA-seq multiply aligned reads CME W1 Cl.8+ [ALL]
embargo expired
GBrowse tracks: CME_5959_hits.DCCheader.sam.gz.bam.sorted


1 files Download data files
modENCODE_4425


Related to: modENCODE_555
modENCODE_4404

Dm Cell Line Expression stranded RNA-seq ML-DmD32 multiply mapping reads ML-DmD32 [ALL]
embargo expired
GBrowse tracks: ML-DmD32.sub_4425.bam


1 files Download data files
modENCODE_4427


Related to: modENCODE_555
modENCODE_4406

Dm Cell Line Expression stranded RNA-seq ML-DmD8 multiply mapping reads ML-DmD8 [ALL]
embargo expired
GBrowse tracks: ML-DmD8.sub_4427.bam


1 files Download data files
modENCODE_4419


Related to: modENCODE_555
modENCODE_4398

Dm Cell Line Expression stranded RNA-seq ML-DmBG2-c2 multiply mapping reads ML-DmBG2-c2 [ALL]
embargo expired
GBrowse tracks: BG2c2.sub_4419.bam


1 files Download data files
modENCODE_4426


Related to: modENCODE_555
modENCODE_4405

Dm Cell Line Expression stranded RNA-seq ML-DmD4-c1 multiply mapping reads ML-DmD4-c1 [ALL]
embargo expired
GBrowse tracks: ML-DmD4-c1.sub_4426.bam


1 files Download data files
modENCODE_4420


Related to: modENCODE_555
modENCODE_4399

Dm Cell Line Expression stranded RNA-seq ML-DmD11 multiply mapping reads ML-DmD11 [ALL]
embargo expired
GBrowse tracks: ML-DmD11.sub_4420.bam


1 files Download data files
modENCODE_4412


Related to: modENCODE_555
modENCODE_4391

Dm Cell Line Expression stranded RNA-seq 1182-4H multiply mapping reads 1182-4H [ALL]
embargo expired
GBrowse tracks: 1182-4H.sub_4412.bam


1 files Download data files
modENCODE_4421


Related to: modENCODE_555
modENCODE_4400

Dm Cell Line Expression stranded RNA-seq ML-DmD16-c3 multiply mapping reads ML-DmD16-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmD16-c3.sub_4421.bam


1 files Download data files
modENCODE_4413


Related to: modENCODE_555
modENCODE_4392

Dm Cell Line Expression stranded RNA-seq CME L1 multiply mapping reads CME L1 [ALL]
embargo expired
GBrowse tracks: CME_L1.bam.bam.sorted.bam


1 files Download data files
modENCODE_4428


Related to: modENCODE_4407

Dm Cell Line Expression stranded RNA-seq ML-DmD9 multiply mapping reads embargo expired
GBrowse tracks: ML-DmD9.sub_4428.bam


1 files Download data files
modENCODE_4422


Related to: modENCODE_555
modENCODE_4401

Dm Cell Line Expression stranded RNA-seq ML-DmD17-c3 multiply mapping reads ML-DmD17-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmD17-c3.sub_4422.bam


1 files Download data files
modENCODE_4432


Related to: modENCODE_555
modENCODE_4411

Dm Cell Line Expression stranded RNA-seq Sg4 multiply mapping reads Sg4 [ALL]
embargo expired
GBrowse tracks: Sg4.bam.bam.sorted.bam


1 files Download data files
modENCODE_4414


Related to: modENCODE_555
modENCODE_4393

Dm Cell Line Expression stranded RNA-seq CME W2 multiply mapping reads CME W2 [ALL]
embargo expired
GBrowse tracks: CME_W2.sub_4414.bam


1 files Download data files
modENCODE_4415


Related to: modENCODE_555
modENCODE_4394

Dm Cell Line Expression stranded RNA-seq GM2 multiply mapping reads GM2 [ALL]
embargo expired
GBrowse tracks: GM2.sub_4415.bam


1 files Download data files