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Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq SPA Bowtie analysis

experiment: Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq SPA Bowtie analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from various cell lines of Drosophila melanogaster. Reads were aligned to unique locations in the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011).

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 28 Computational annotation submissions for this experiment:
DCC id Name cell line Embargoed until Features, GBrowse and Data Files
modENCODE_4738


Related to: modENCODE_555
modENCODE_4409

D.melanogaster Cell Line Expression RNA-seq S2-R+ uniquely mapping reads S2R+ [ALL]
embargo expired
GBrowse tracks: S2Rplus.sub_4738.merged


1 files Download data files
modENCODE_4724


Related to: modENCODE_555
modENCODE_4395

D.melanogaster Cell Line Expression RNA-seq Kc167 uniquely mapping reads Kc167 [ALL]
embargo expired
GBrowse tracks: Kc167.sub_4724.merged


1 files Download data files
modENCODE_4725


Related to: modENCODE_555
modENCODE_4396

D.melanogaster Cell Line Expression RNA-seq MBN2 uniquely mapping reads mbn2 [ALL]
embargo expired
GBrowse tracks: MBN2.sub_4725.merged


1 files Download data files
modENCODE_4737


Related to: modENCODE_555
modENCODE_4408

D.melanogaster Cell Line Expression RNA-seq S1 uniquely mapping reads S1 [ALL]
embargo expired
GBrowse tracks: S1.sub_4737.merged


1 files Download data files
modENCODE_5960


Related to: modENCODE_555
modENCODE_5952

Kc167 unstranded RNA-seq uniquely aligned reads Kc167 [ALL]
embargo expired
GBrowse tracks: Kc167-COMBINED.sam.bam.sorted
GEO: GSM390059
GEO: GSM390060


10 files Download data files
modENCODE_4735


Related to: modENCODE_555
modENCODE_4406

D.melanogaster Cell Line Expression RNA-seq ML-DmD8 uniquely mapping reads ML-DmD8 [ALL]
embargo expired
GBrowse tracks: ML-DmD8.sub_4735.sorted


1 files Download data files
modENCODE_5962


Related to: modENCODE_555
modENCODE_5954

ML-DmBG3-c2 unstranded RNA-seq uniquely aligned reads ML-DmBG3-c2 [ALL]
embargo expired
GBrowse tracks: ML-DmBG3-c2-COMBINED.sam.bam.sorted
GEO: GSM390065
GEO: GSM390066


10 files Download data files
modENCODE_4726


Related to: modENCODE_555
modENCODE_4397

D.melanogaster Cell Line Expression RNA-seq ML-DmBG1-c1 uniquely mapping reads ML-DmD17-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmBG1-c1.sub_4726.sorted


1 files Download data files
modENCODE_5961


Related to: modENCODE_555
modENCODE_5953

S2-DRSC unstranded RNA-seq uniquely aligned reads S2-DRSC [ALL]
embargo expired
GBrowse tracks: S2-DRSC-COMBINED.sam.bam.sorted
GEO: GSM390063
GEO: GSM390064


10 files Download data files
modENCODE_4727


Related to: modENCODE_555
modENCODE_4398

D.melanogaster Cell Line Expression RNA-seq ML-DmBG2-c2 uniquely mapping reads ML-DmBG2-c2 [ALL]
embargo expired
GBrowse tracks: ML-DmBG2-c2.sub_4727.merged


1 files Download data files
modENCODE_5963


Related to: modENCODE_555
modENCODE_5955

CME W1 Cl.8+ unstranded RNA-seq uniquely aligned reads CME W1 Cl.8+ [ALL]
embargo expired
GBrowse tracks: CME_W1_Cl.8-COMBINED.sam.bam.sorted
GEO: GSM390061
GEO: GSM390062


5 files Download data files
modENCODE_4720


Related to: modENCODE_555
modENCODE_4391

D.melanogaster Cell Line Expression RNA-seq 1182-4H uniquely mapping reads 1182-4H [ALL]
embargo expired
GBrowse tracks: 1182-4H.sub_4720.sorted


1 files Download data files
modENCODE_4721


Related to: modENCODE_555
modENCODE_4392

D.melanogaster Cell Line Expression RNA-seq CME L1 uniquely mapping reads CME L1 [ALL]
embargo expired
GBrowse tracks: CME_L1.sub_4721.merged


1 files Download data files
modENCODE_4740


Related to: modENCODE_555
modENCODE_4411

D.melanogaster Cell Line Expression RNA-seq Sg4 uniquely mapping reads Sg4 [ALL]
embargo expired
GBrowse tracks: Sg4.sub_4740.sorted


1 files Download data files
modENCODE_4722


Related to: modENCODE_555
modENCODE_4393

D.melanogaster Cell Line Expression RNA-seq CME W2 uniquely mapping reads CME W2 [ALL]
embargo expired
GBrowse tracks: CME_W2.sub_4722.merged


1 files Download data files
modENCODE_4723


Related to: modENCODE_555
modENCODE_4394

D.melanogaster Cell Line Expression RNA-seq GM2 uniquely mapping reads GM2 [ALL]
embargo expired
GBrowse tracks: GM2.sub_4723.merged


1 files Download data files
modENCODE_4739


Related to: modENCODE_555
modENCODE_4410

D.melanogaster Cell Line Expression RNA-seq S3 uniquely mapping reads S3 [ALL]
embargo expired
GBrowse tracks: S3.sub_4739.merged


1 files Download data files
modENCODE_5970


Related to: modENCODE_5964

Cell Lines OSS RNA-seq uniquely mapped reads Ovary Somatic Sheet [ALL]
embargo expired
GBrowse tracks: OSS_all_redo.sorted.bam.bam.sorted


1 files Download data files
modENCODE_5971


Related to: modENCODE_5965

Cell Lines OSC RNA-seq uniquely mapped reads OSC [ALL]
embargo expired
GBrowse tracks: OSC_all_redo.sorted.bam.bam.sorted


1 files Download data files
modENCODE_4732


Related to: modENCODE_555
modENCODE_4403

D.melanogaster Cell Line Expression RNA-seq ML-DmD21 uniquely mapping reads ML-DmD21 [ALL]
embargo expired
GBrowse tracks: ML-DmD21.sub_4732.sorted


1 files Download data files
modENCODE_5972


Related to: modENCODE_5966

Cell Lines fGS RNA-seq uniquely mapped reads fGS/OSS [ALL]
embargo expired
GBrowse tracks: fGS_all_redo.sorted.bam.bam.sorted


1 files Download data files
modENCODE_4733


Related to: modENCODE_555
modENCODE_4404

D.melanogaster Cell Line Expression RNA-seq ML-DmD32 uniquely mapping reads ML-DmD32 [ALL]
embargo expired
GBrowse tracks: ML-DmD32.sub_4733.merged


1 files Download data files
modENCODE_4734


Related to: modENCODE_555
modENCODE_4405

D.melanogaster Cell Line Expression RNA-seq ML-DmD4-c1 uniquely mapping reads ML-DmD4-c1 [ALL]
embargo expired
GBrowse tracks: ML-DmD4-c1.sub_4734.merged


1 files Download data files
modENCODE_4728


Related to: modENCODE_555
modENCODE_4399

D.melanogaster Cell Line Expression RNA-seq ML-DmD11 uniquely mapping reads ML-DmD11 [ALL]
embargo expired
GBrowse tracks: ML-DmD11.sub_4728.merged


1 files Download data files
modENCODE_4736


Related to: modENCODE_4407

D.melanogaster Cell Line Expression RNA-seq ML-DmD9 uniquely mapping reads embargo expired
GBrowse tracks: ML-DmD9.sub_4736.sorted


1 files Download data files
modENCODE_4729


Related to: modENCODE_555
modENCODE_4400

D.melanogaster Cell Line Expression RNA-seq ML-DmD16-c3 uniquely mapping reads ML-DmD16-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmD16-c3.sub_4729.merged


1 files Download data files
modENCODE_4730


Related to: modENCODE_555
modENCODE_4401

D.melanogaster Cell Line Expression RNA-seq ML-DmD17-c3 uniquely mapping reads ML-DmD17-c3 [ALL]
embargo expired
GBrowse tracks: ML-DmD17-c3.sub_4730.merged


1 files Download data files
modENCODE_4731


Related to: modENCODE_555
modENCODE_4402

D.melanogaster Cell Line Expression RNA-seq ML-DmD20-c5 uniquely mapping reads ML-DmD20-c5 [ALL]
embargo expired
GBrowse tracks: ML-DmD20-c5.sub_4731.merged


1 files Download data files