modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq

experiment: Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley, Sue Celniker
RNA-seq analysis was performed on poly(A)+ RNA from various cell lines of Drosophila melanogaster. Total RNA was isolated by the Peter Cherbas group. Isolation of poly(A)+ RNA and strand-specific library construction were performed in the Brenton Graveley lab. Libraries were distributed among 3 labs in the Drosophila Transcriptome group for sequencing (Celniker, Gingeras, and Graveley) for paired-end RNA sequencing (2x76+ nt) on the GAIIx platform. Fastq files were generated using pipeline version 1.5.
There are 30 RNA-seq submissions for this experiment:
DCC id Name cell line Embargoed until Features, GBrowse and Data Files
modENCODE_4416


Related to: modENCODE_555
modENCODE_4395

Dm Cell Line Expression stranded RNA-seq Kc167 multiply mapping reads Kc167 [ALL]
embargo expired

1 files Download data files
modENCODE_4395


Related to: modENCODE_555
modENCODE_4416
modENCODE_4724

Dm Cell Line Expression stranded RNA-seq Kc167 sequences Kc167 [ALL]
embargo expired SRA: SRR070261
SRA: SRR070269
SRA: SRR111873
Download data files
modENCODE_4410


Related to: modENCODE_555
modENCODE_4739
modENCODE_4431

Dm Cell Line Expression stranded RNA-seq S3 sequences S3 [ALL]
embargo expired SRA: SRR070259
SRA: SRR111872
SRA: SRR189834
SRA: SRR189835
Download data files
modENCODE_4396


Related to: modENCODE_555
modENCODE_4725
modENCODE_4417

Dm Cell Line Expression stranded RNA-seq MBN2 sequences mbn2 [ALL]
embargo expired SRA: SRR070258
SRA: SRR111869
SRA: SRR189833
Download data files
modENCODE_4417


Related to: modENCODE_555
modENCODE_4396

Dm Cell Line Expression stranded RNA-seq MBN2 multiply mapping reads mbn2 [ALL]
embargo expired

1 files Download data files
modENCODE_4409


Related to: modENCODE_555
modENCODE_4430
modENCODE_4738

Dm Cell Line Expression stranded RNA-seq S2-R+ sequences S2R+ [ALL]
embargo expired SRA: SRR070266
SRA: SRR070279
SRA: SRR124149
Download data files
modENCODE_4397


Related to: modENCODE_555
modENCODE_4418
modENCODE_4726

Dm Cell Line Expression stranded RNA-seq ML-DmBG1-c1 sequences ML-DmD17-c3 [ALL]
embargo expired SRA: SRR070275
Download data files
modENCODE_4408


Related to: modENCODE_555
modENCODE_4429
modENCODE_4737

Dm Cell Line Expression stranded RNA-seq S1 sequences S1 [ALL]
embargo expired SRA: SRR070280
SRA: SRR070286
SRA: SRR111877
Download data files
modENCODE_4398


Related to: modENCODE_555
modENCODE_4419
modENCODE_4727

Dm Cell Line Expression stranded RNA-seq ML-DmBG2-c2 sequences ML-DmBG2-c2 [ALL]
embargo expired SRA: SRR070262
SRA: SRR070270
SRA: SRR111870
Download data files
modENCODE_4406


Related to: modENCODE_555
modENCODE_4427
modENCODE_4735

Dm Cell Line Expression stranded RNA-seq ML-DmD8 sequences ML-DmD8 [ALL]
embargo expired SRA: SRR070277
Download data files
modENCODE_4399


Related to: modENCODE_555
modENCODE_4728
modENCODE_4420

Dm Cell Line Expression stranded RNA-seq ML-DmD11 sequences ML-DmD11 [ALL]
embargo expired SRA: SRR070284
SRA: SRR070290
SRA: SRR111874
Download data files
modENCODE_4391


Related to: modENCODE_555
modENCODE_4412
modENCODE_4720

Dm Cell Line Expression stranded RNA-seq 1182-4H sequences 1182-4H [ALL]
embargo expired SRA: SRR070272
Download data files
modENCODE_4392


Related to: modENCODE_555
modENCODE_4413
modENCODE_4721

Dm Cell Line Expression stranded RNA-seq CME L1 sequences CME L1 [ALL]
embargo expired SRA: SRR070282
SRA: SRR070288
Download data files
modENCODE_4407


Related to: modENCODE_555
modENCODE_4428
modENCODE_4736

Dm Cell Line Expression stranded RNA-seq ML-DmD9 sequences ML-DmD9 [ALL]
embargo expired SRA: SRR070274
Download data files
modENCODE_4393


Related to: modENCODE_555
modENCODE_4414
modENCODE_4722

Dm Cell Line Expression stranded RNA-seq CME W2 sequences CME W2 [ALL]
embargo expired SRA: SRR070260
SRA: SRR070268
SRA: SRR111868
Download data files
modENCODE_4394


Related to: modENCODE_555
modENCODE_4723
modENCODE_4415

Dm Cell Line Expression stranded RNA-seq GM2 sequences GM2 [ALL]
embargo expired SRA: SRR070265
SRA: SRR070278
Download data files
modENCODE_4431


Related to: modENCODE_555
modENCODE_4410

Dm Cell Line Expression stranded RNA-seq S3 multiply mapping reads S3 [ALL]
embargo expired

1 files Download data files
modENCODE_4411


Related to: modENCODE_555
modENCODE_4740
modENCODE_4432

Dm Cell Line Expression stranded RNA-seq Sg4 sequences Sg4 [ALL]
embargo expired SRA: SRR070271
Download data files
modENCODE_5965


Related to: modENCODE_5968
modENCODE_5971

Cell Lines OSC RNA-seq sequences OSC [ALL]
embargo expired SRA: SRR500468
Download data files
modENCODE_4403


Related to: modENCODE_555
modENCODE_4732
modENCODE_4424

Dm Cell Line Expression stranded RNA-seq ML-DmD21 sequences ML-DmD21 [ALL]
embargo expired SRA: SRR070276
Download data files
modENCODE_5967


Related to: modENCODE_5964

Cell Lines OSS RNA-seq multiply mapped reads Ovary Somatic Sheet [ALL]
embargo expired

1 files Download data files
modENCODE_5968


Related to: modENCODE_5965

Cell Lines OSC RNA-seq multiply mapped reads OSC [ALL]
embargo expired

1 files Download data files
modENCODE_4404


Related to: modENCODE_555
modENCODE_4733
modENCODE_4425

Dm Cell Line Expression stranded RNA-seq ML-DmD32 sequences ML-DmD32 [ALL]
embargo expired SRA: SRR070281
SRA: SRR070287
SRA: SRR111875
Download data files
modENCODE_4405


Related to: modENCODE_555
modENCODE_4734
modENCODE_4426

Dm Cell Line Expression stranded RNA-seq ML-DmD4-c1 sequences ML-DmD4-c1 [ALL]
embargo expired SRA: SRR070273
SRA: SRR111876
Download data files
modENCODE_5966


Related to: modENCODE_5972
modENCODE_5969

Cell Lines fGS RNA-seq sequences fGS/OSS [ALL]
embargo expired SRA: SRR500469
Download data files
modENCODE_5969


Related to: modENCODE_5966

Cell Lines fGS RNA-seq multiply mapped reads fGS/OSS [ALL]
embargo expired

1 files Download data files
modENCODE_4400


Related to: modENCODE_555
modENCODE_4729
modENCODE_4421

Dm Cell Line Expression stranded RNA-seq ML-DmD16-c3 sequences ML-DmD16-c3 [ALL]
embargo expired SRA: SRR070283
SRA: SRR070289
Download data files
modENCODE_4402


Related to: modENCODE_555
modENCODE_4731
modENCODE_4423

Dm Cell Line Expression stranded RNA-seq ML-DmD20-c5 sequences ML-DmD20-c5 [ALL]
embargo expired SRA: SRR070267
SRA: SRR111871
Download data files
modENCODE_5964


Related to: modENCODE_5967
modENCODE_5970

Cell Lines OSS RNA-seq sequences Ovary Somatic Sheet [ALL]
embargo expired SRA: SRR500470
Download data files
modENCODE_4401


Related to: modENCODE_555
modENCODE_4730
modENCODE_4422

Dm Cell Line Expression stranded RNA-seq ML-DmD17-c3 sequences ML-DmD17-c3 [ALL]
embargo expired SRA: SRR070285
SRA: SRR070291
Download data files