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Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq SPA Bowtie analysis

	experiment: Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq SPA Bowtie analysis	project: The Drosophila Transcriptome	PI: Sue Celniker	Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from various cell lines of Drosophila melanogaster. Reads were aligned to unique locations in the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011).

There are 28 Computational annotation submissions for this experiment:

DCC id	Name	cell line	Embargoed until	Features, GBrowse and Data Files
modENCODE_4738 Related to: modENCODE_555 modENCODE_4409	D.melanogaster Cell Line Expression RNA-seq S2-R+ uniquely mapping reads	S2R+ [ALL]	embargo expired	1 files Download data files
modENCODE_4724 Related to: modENCODE_555 modENCODE_4395	D.melanogaster Cell Line Expression RNA-seq Kc167 uniquely mapping reads	Kc167 [ALL]	embargo expired	1 files Download data files
modENCODE_4725 Related to: modENCODE_555 modENCODE_4396	D.melanogaster Cell Line Expression RNA-seq MBN2 uniquely mapping reads	mbn2 [ALL]	embargo expired	1 files Download data files
modENCODE_4737 Related to: modENCODE_555 modENCODE_4408	D.melanogaster Cell Line Expression RNA-seq S1 uniquely mapping reads	S1 [ALL]	embargo expired	1 files Download data files
modENCODE_5960 Related to: modENCODE_555 modENCODE_5952	Kc167 unstranded RNA-seq uniquely aligned reads	Kc167 [ALL]	embargo expired	GEO: GSM390059 GEO: GSM390060 10 files Download data files
modENCODE_4735 Related to: modENCODE_555 modENCODE_4406	D.melanogaster Cell Line Expression RNA-seq ML-DmD8 uniquely mapping reads	ML-DmD8 [ALL]	embargo expired	1 files Download data files
modENCODE_5962 Related to: modENCODE_555 modENCODE_5954	ML-DmBG3-c2 unstranded RNA-seq uniquely aligned reads	ML-DmBG3-c2 [ALL]	embargo expired	GEO: GSM390065 GEO: GSM390066 10 files Download data files
modENCODE_4726 Related to: modENCODE_555 modENCODE_4397	D.melanogaster Cell Line Expression RNA-seq ML-DmBG1-c1 uniquely mapping reads	ML-DmD17-c3 [ALL]	embargo expired	1 files Download data files
modENCODE_5961 Related to: modENCODE_555 modENCODE_5953	S2-DRSC unstranded RNA-seq uniquely aligned reads	S2-DRSC [ALL]	embargo expired	GEO: GSM390063 GEO: GSM390064 10 files Download data files
modENCODE_4727 Related to: modENCODE_555 modENCODE_4398	D.melanogaster Cell Line Expression RNA-seq ML-DmBG2-c2 uniquely mapping reads	ML-DmBG2-c2 [ALL]	embargo expired	1 files Download data files
modENCODE_5963 Related to: modENCODE_555 modENCODE_5955	CME W1 Cl.8+ unstranded RNA-seq uniquely aligned reads	CME W1 Cl.8+ [ALL]	embargo expired	GEO: GSM390061 GEO: GSM390062 5 files Download data files
modENCODE_4720 Related to: modENCODE_555 modENCODE_4391	D.melanogaster Cell Line Expression RNA-seq 1182-4H uniquely mapping reads	1182-4H [ALL]	embargo expired	1 files Download data files
modENCODE_4721 Related to: modENCODE_555 modENCODE_4392	D.melanogaster Cell Line Expression RNA-seq CME L1 uniquely mapping reads	CME L1 [ALL]	embargo expired	1 files Download data files
modENCODE_4740 Related to: modENCODE_555 modENCODE_4411	D.melanogaster Cell Line Expression RNA-seq Sg4 uniquely mapping reads	Sg4 [ALL]	embargo expired	1 files Download data files
modENCODE_4722 Related to: modENCODE_555 modENCODE_4393	D.melanogaster Cell Line Expression RNA-seq CME W2 uniquely mapping reads	CME W2 [ALL]	embargo expired	1 files Download data files
modENCODE_4723 Related to: modENCODE_555 modENCODE_4394	D.melanogaster Cell Line Expression RNA-seq GM2 uniquely mapping reads	GM2 [ALL]	embargo expired	1 files Download data files
modENCODE_4739 Related to: modENCODE_555 modENCODE_4410	D.melanogaster Cell Line Expression RNA-seq S3 uniquely mapping reads	S3 [ALL]	embargo expired	1 files Download data files
modENCODE_5970 Related to: modENCODE_5964	Cell Lines OSS RNA-seq uniquely mapped reads	Ovary Somatic Sheet [ALL]	embargo expired	1 files Download data files
modENCODE_5971 Related to: modENCODE_5965	Cell Lines OSC RNA-seq uniquely mapped reads	OSC [ALL]	embargo expired	1 files Download data files
modENCODE_4732 Related to: modENCODE_555 modENCODE_4403	D.melanogaster Cell Line Expression RNA-seq ML-DmD21 uniquely mapping reads	ML-DmD21 [ALL]	embargo expired	1 files Download data files
modENCODE_5972 Related to: modENCODE_5966	Cell Lines fGS RNA-seq uniquely mapped reads	fGS/OSS [ALL]	embargo expired	1 files Download data files
modENCODE_4733 Related to: modENCODE_555 modENCODE_4404	D.melanogaster Cell Line Expression RNA-seq ML-DmD32 uniquely mapping reads	ML-DmD32 [ALL]	embargo expired	1 files Download data files
modENCODE_4734 Related to: modENCODE_555 modENCODE_4405	D.melanogaster Cell Line Expression RNA-seq ML-DmD4-c1 uniquely mapping reads	ML-DmD4-c1 [ALL]	embargo expired	1 files Download data files
modENCODE_4728 Related to: modENCODE_555 modENCODE_4399	D.melanogaster Cell Line Expression RNA-seq ML-DmD11 uniquely mapping reads	ML-DmD11 [ALL]	embargo expired	1 files Download data files
modENCODE_4736 Related to: modENCODE_4407	D.melanogaster Cell Line Expression RNA-seq ML-DmD9 uniquely mapping reads		embargo expired	1 files Download data files
modENCODE_4729 Related to: modENCODE_555 modENCODE_4400	D.melanogaster Cell Line Expression RNA-seq ML-DmD16-c3 uniquely mapping reads	ML-DmD16-c3 [ALL]	embargo expired	1 files Download data files
modENCODE_4730 Related to: modENCODE_555 modENCODE_4401	D.melanogaster Cell Line Expression RNA-seq ML-DmD17-c3 uniquely mapping reads	ML-DmD17-c3 [ALL]	embargo expired	1 files Download data files
modENCODE_4731 Related to: modENCODE_555 modENCODE_4402	D.melanogaster Cell Line Expression RNA-seq ML-DmD20-c5 uniquely mapping reads	ML-DmD20-c5 [ALL]	embargo expired	1 files Download data files

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