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Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq TopHat alignments

experiment: Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq TopHat alignments project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
Stranded RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 21 Computational annotation submissions for this experiment:
DCC id Name developmental stage compound strain Embargoed until Features, GBrowse and Data Files
modENCODE_4353


Related to: modENCODE_3724
modENCODE_4270

Dm Treatment Expression RNA-seq 10% EtOH Third Instar larvae multiply mapping reads L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: EtOH_10percent_L3.bam.bam.sorted


1 files Download data files
modENCODE_4372


Related to: modENCODE_3724
modENCODE_4289

Dm Treatment Expression RNA-seq Zn Treatment 4.5mM Zinc Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
zinc dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Zn_4.5mM_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4363


Related to: modENCODE_3725
modENCODE_4280

Dm Treatment Expression RNA-seq Cold treatment Method 1 Four Day Adults multiply mapping reads adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cold1_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4364


Related to: modENCODE_3725
modENCODE_4281

Dm Treatment Expression RNA-seq Cold Treatment Method 2 Four Day Adults multiply mapping reads adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cold2_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4354


Related to: modENCODE_3724
modENCODE_4271

Dm Treatment Expression RNA-seq 2.5% EtOH Third Instar larvae multiply mapping reads L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: EtOH_2.5percent_L3.bam.bam.sorted


1 files Download data files
modENCODE_4361


Related to: modENCODE_3724
modENCODE_4278

Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 6hr multiply mapping reads L3 stage wandering larvae [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cd_0.05mM_CdCl2_L3_6hr.bam.bam.sorted.bam


1 files Download data files
modENCODE_4356


Related to: modENCODE_3724
modENCODE_4273

Dm Treatment Expression RNA-seq Caffeine Treatment 1.5 mg ml Third instar larvae multiply mapping reads L3 stage wandering larvae [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Caffeine_1.5mgperml_L3.bam.bam.sorted.bam


1 files Download data files
modENCODE_4355


Related to: modENCODE_3724
modENCODE_4272

Dm Treatment Expression RNA-seq 5% EtOH Third Instar larvae multiply mapping reads L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: EtOH_5percent_L3.bam.bam.sorted


1 files Download data files
modENCODE_4367


Related to: modENCODE_3725
modENCODE_4284

Dm Treatment Expression RNA-seq Heat shock 1hr@36C wet heat 30min@25C Four Day Adults multiply mapping reads adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: HeatShock1hr36C_WetHeat30min25C_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4371


Related to: modENCODE_3724
modENCODE_4288

Dm Treatment Expression RNA-seq Rotenone Treatment 8ug ml Third Instar Larvae multiply mapping reads L3 stage wandering larvae [ALL]
rotenone [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Rotenone_8ugperml_L3.bam.bam.sorted.bam


1 files Download data files
modENCODE_4357


Related to: modENCODE_3724
modENCODE_4274

Dm Treatment Expression RNA-seq Caffeine Treatment 2.5 mg ml Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Caffeine_2.5mg_per_ml_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4373


Related to: modENCODE_3724
modENCODE_4290

Dm Treatment Expression RNA-seq Zn Treatment 5mM Zinc Late Third Instar Larvae multiply mapping reads L3 stage wandering larvae [ALL]
zinc dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Zn_5mM_Late_L3.bam.bam.sorted.bam


1 files Download data files
modENCODE_4370


Related to: modENCODE_3724
modENCODE_4287

Dm Treatment Expression RNA-seq Rotenone Treatment 2ug ml Third Instar Larvae multiply mapping reads L3 stage wandering larvae [ALL]
rotenone [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Rotenone_2ugperml_L3.bam.bam.sorted.bam


1 files Download data files
modENCODE_4368


Related to: modENCODE_3724
modENCODE_4285

Dm Treatment Expression RNA-seq Paraquat Treatment 10mM Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
paraquat [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Paraquat_10mM_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4366


Related to: modENCODE_3724
modENCODE_4283

Dm Treatment Expression RNA-seq Cu Treatment 15mM Copper Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
copper(2+) sulfate [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cu_15mM_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4362


Related to: modENCODE_3724
modENCODE_4279

Dm Treatment Expression RNA-seq Cd Treatment 0.1M CdCl2 Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cd_0.1M_CdCl2_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4369


Related to: modENCODE_3724
modENCODE_4286

Dm Treatment Expression RNA-seq Paraquat Treatment 5mM Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
paraquat [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Paraquat_5mM_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4358


Related to: modENCODE_3724
modENCODE_4275

Dm Treatment Expression RNA-seq Caffeine Treatment Pre Lethal Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Caffeine_PreLethal_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files
modENCODE_4365


Related to: modENCODE_3724
modENCODE_4282

Dm Treatment Expression RNA-seq Cu Treatment 0.5mM Copper Third Instar Larvae multiply mapping reads L3 stage wandering larvae [ALL]
copper(2+) sulfate [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cu_0.5mM_L3.bam.bam.sorted.bam


1 files Download data files
modENCODE_4360


Related to: modENCODE_3724
modENCODE_4277

Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 12hr multiply mapping reads L3 stage wandering larvae [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cd_0.05mM_CdCl2_L3_12hr.bam.bam.sorted.bam


1 files Download data files
modENCODE_4359


Related to: modENCODE_3724
modENCODE_4276

Dm Treatment Expression RNA-seq Cd Treatment 0.05M CdCl2 Four Day Adults multiply mapping reads Adult mixed-sex flies [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: Cd_0.05M_CdCl2_AdMixed_4days.bam.bam.sorted.bam


1 files Download data files